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JOURNAL ARTICLES

Journal articles are scientific publications that tend to be highly technical, representing the latest theoretical research and experimental results in a variety of research topics. AWAE scientists publish in journals, books, and other media sources. Find the latest journal articles written by our scientists. Articles can also be sorted by author or by project/research subject, and are also accessible from Treesearch, a system for sharing free, full-text publications.

GENERAL TECHNICAL REPORTS

A General Technical Report (GTR) provides technical or scientific information often for a technical audience such as land managers, natural resource professionals, etc. It may contain scientific data, descriptions, or syntheses; descriptions of tools and products (e.g., computer programs, simulators, and models), annotated bibliographies, etc. GTRs can be sorted by Title, Subject, or Researcher and are available in PDF format for instant access and easy reference.

SCIENCE BRIEFINGS

Communicating and distributing the scientific knowledge generated by AWAE is integral to our mission. Science Briefings bring you up to speed with research highlights selected from peer-reviewed science journals. Briefings communicate our most significant findings to people who make and influence decisions about land management. Science Briefings can be sorted by Title, Subject, or by Researcher and are available in PDF format — simple, easy and fast.

RECENT PUBLICATIONS

Sort by: 2019 | 2018 | 2017 | 2016 | 2015 | 2014 | publications by author | publications by subject

2019

2018

Cooke, Brian; Battaglia, Mike; Dwire, Kathleen; Isaak, Dan; Joyce, Linda; Merritt, David; Oropeza, Jill; Regan, Claudia; Reynolds, Lindsay; Rice, Janine; Schillie, Trey. 2018. Warming and warnings: Assessing climate change vulnerability in the Rocky Mountain Region. Science You Can Use Bulletin, Special General Technical Report Companion. Fort Collins, CO: Rocky Mountain Research Station. 15 p.

Dysthe JC, Carim KJ, Franklin TW, Kikkert D, Young MK, McKelvey KS, Schwartz MK. 2018. Molecular detection of northern leatherside chub (Lepidomeda copei) DNA in environmental samples. Northwest Science, 78, 92–99.

Dysthe, Joseph C.; Rodgers, Torrey; Franklin, Thomas W.; Carim, Kellie J.; Young, Michael K.; McKelvey, Kevin S.; Mock, Karen, E.; Schwartz, Michael K. . 2018. Repurposing environmental DNA samples—detecting the western pearlshell (Margaritifera falcata) as a proof of concept. Ecology and Evolution. 00:1–12. DOI: 10.1002/ece3.3898.

Franklin, Thomas W.; Dysthe, Joseph C.; Rubenson, Erika S.; Carim, Kellie J.; Olden, Julian D.; McKelvey, Kevin S.; Young, Michael K.; Schwartz, Michael K. 2018. A non-invasive sampling method for detecting non-native smallmouth bass (Micropterus dolomieu). Northwest Science. 92(2): 149-157.

Isaak, Daniel J.; Luce, Charles H.; Chandler, Gwynne L.; Horan, Dona L.; Wollrab, Sherry P. 2018. Principle components of thermal regimes in mountain river networks. Hydrology and Earth Systems Sciences. 22: 6225-6240.

Isaak, D.J., C. Luce, D. Horan, G. Chandler, S. Wollrab, and D. Nagel. 2018. Global warming of salmon and trout rivers in the northwestern U.S.: Road to ruin or path through purgatory? Transactions of the American Fisheries Society 147: 566-587. DOI:10.1002/tafs.10059.

related poster: Global warming of salmon and trout rivers in the northwestern U.S.: Road to ruin or path through purgatory?

related briefing paper: Fishing for Climate Data: How Recent Research is Helping to Forecast Changes in Salmon and Trout Habitat

Isaak, Daniel J.; Ramsey, Katherine; Chatel, John C.; Konnoff, Deborah L.; Gecy, Robert A.; Horan, Dona. 2017. Climate change, fish, and aquatic habitat in the Blue Mountains [Chapter 5]. In: Halofsky, Jessica E.; Peterson, David L., eds. Climate change vulnerability and adaptation in the Blue Mountains. Gen. Tech. Rep. PNW-GTR-939. Portland, OR: U.S. Department of Agriculture, Forest Service, Pacific Northwest Research Station. p. 91-148.

Isaak, Daniel J.; Young, Michael K.; McConnell, Callie; Roper, Brett B.; Archer, Eric K.; Staab, Brian; Hirsch, Christine; Nagel, David E.; Schwartz, Michael K.; Chandler, Gwynne L. 2018. Crowd-sourced databases as essential elements for Forest Service partnerships and aquatic resource conservation. Fisheries. 43(9): 423-430.

Isaak, Daniel J.; Young, Michael K.; Tait, Cynthia; Duffield, Daniel; Horan, Dona L.; Nagel, David E.; Groce, Matthew C. 2018. Effects of climate change on native fish and other aquatic species [Chapter 5]. In: Halofsky, Jessica E.; Peterson, David L.; Ho, Joanne J.; Little, Natalie, J.; Joyce, Linda A., eds. Climate change vulnerability and adaptation in the Intermountain Region [Part 1]. Gen. Tech. Rep. RMRS-GTR-375. Fort Collins, CO: U.S. Department of Agriculture, Forest Service, Rocky Mountain Research Station. p. 89-111.

Leasure, Douglas R.; Wenger, Seth J.; Chelgren, Nathan D.; Neville, Helen M.; Dauwalter, Daniel C.; Bjork, Robin; Fesenmyer, Kurt A.; Dunham, Jason B.; Peacock, Mary M.; Luce, Charlie H.; Lute, Abby C.; Isaak, Daniel J. 2018. Hierarchical multi-population viability analysis. Ecology. doi: 10.1002/ecy.2538.

Rhoades, Charles C.; Pelz, Kristen A.; Fornwalt, Paula J.; Wolk, Brett H.; Cheng, Antony S. 2018. Overlapping bark beetle outbreaks, salvage logging and wildfire restructure a lodgepole pine ecosystem. Forests. 9(3): 101.

Robichaud PR, Massman WJ, Lesiecki ML. 2018. High soil temperature data archive from prescribed fires and wildfires database. Ft. Collins, CO: US Department of Agriculture, Forest Service, Rocky Mountain Research Station.

Shively, Dan; Rothlisberger, John D.; Gillespie, Nathaniel; Dombeck, Mike; Moore, Virgil; Roghair, Craig; Demario, Devin; McCormick, Frank; Weldon, Leslie. 2018. Historical perspectives and a new U.S. Forest Service strategy for fish and aquatic stewardship. Fisheries. 43(9): 386-395.

Wilcox, T.M., K. J. Carim, M. K. Young, K. S. McKelvey, T. W. Franklin, M. K. Schwartz. 2018. Comment: The Importance of Sound Methodology in Environmental DNA Sampling. North American Journal of Fisheries Management DOI: 10.1002/nafm.10055.

Wilcox, T.M., Young, M.K., McKelvey, K.S., Isaak, D.J., Horan, D.L. and Schwartz, M.K., 2018. Fine-scale environmental DNA sampling reveals climate-mediated interactions between native and invasive trout species. Ecosphere. 9: e02500.

Wilcox, T.M., Zarn, K.E., Piggott, M.P., Young, M.K., McKelvey, K.S. and Schwartz, M.K. 2018. Capture enrichment of aquatic environmental DNA: A first proof of concept. Molecular Ecology Resources 18:1392-1401.

Young, Michael K.; Isaak, Daniel J.; Spaulding, Scott; Thomas, Cameron A.; Barndt, Scott A.; Groce, Matthew C.; Horan, Dona; Nagel, David E. 2018. Climate vulnerability of native cold-water salmonids in the Northern Rockies Region [Chapter 5]. In: Halofsky, Jessica E.; Peterson, David L.; Dante-Wood, S. Karen; Hoang, Linh; Ho, Joanne J.; Joyce, Linda A., eds. Climate change vulnerability and adaptation in the Northern Rocky Mountains [Part 1]. Gen. Tech. Rep. RMRS-GTR-374. Fort Collins, CO: U.S. Department of Agriculture, Forest Service, Rocky Mountain Research Station. p. 87-127.

Young, Michael K.; McKelvey, Kevin S.; Jennings, Tara; Carter, Katie; Cronn, Richard; Keeley, Ernest R.; Loxterman, Janet L.; Pilgrim, Kristine L.; Schwartz, Michael K. 2018. The phylogeography of westslope cutthroat trout. In: Trotter, P.; Bisson, P.; Schultz, L.; Roper, B., eds. Cutthroat Trout: Evolutionary Biology and Taxonomy. Special Publication 36. Bethesda, MD: American Fisheries Society. p. 261-301.

2017

Bisson, Peter A.; Montgomery, David R.; Buffington, John M. 2017. Valley segments, stream reaches, and channel units [Chapter 2]. In: Hauer, F. R.; Lamberti, G. A., eds. Methods in Stream Ecology - Volume 1: Ecosystem Structure (Third Edition). San Diego, CA: Academic Press. p. 21-47.

Clifton, Caty F.; Day, Kate T.; Dello, Kathie; Grant, Gordon E.; Halofsky, Jessica E.; Isaak, Daniel J.; Luce, Charles H.; Safeeq, Mohammad; Staab, Brian P.; Stevenson, John. 2017. Climate change and hydrology in the Blue Mountains [Chapter 3]. In: Halofsky, Jessica E.; Peterson, David L., eds. Climate change vulnerability and adaptation in the Blue Mountains. Gen. Tech. Rep. PNW-GTR-939. Portland, OR: U.S. Department of Agriculture, Forest Service, Pacific Northwest Research Station. p. 25-52.

Clifton, Caty F.; Day, Kate T.; Grant, Gordon E.; Halofsky, Jessica E.; Luce, Charles H.; Staab, Brian P. 2017. Climate change, water resources, and roads in the Blue Mountains [Chapter 4]. In: Halofsky, Jessica E.; Peterson, David L., eds. Climate change vulnerability and adaptation in the Blue Mountains. Gen. Tech. Rep. PNW-GTR-939. Portland, OR: U.S. Department of Agriculture, Forest Service, Pacific Northwest Research Station. p. 53-90.

Dwire, Kathleen A.; Mellmann-Brown, Sabine. 2017. Climate change and special habitats in the Blue Mountains: Riparian areas, wetlands, and groundwater-dependent ecosystems [Chapter 7]. In: Halofsky, Jessica E.; Peterson, David L., eds. Climate change vulnerability and adaptation in the Blue Mountains. Gen. Tech. Rep. PNW-GTR-939. Portland, OR: U.S. Department of Agriculture, Forest Service, Pacific Northwest Research Station. p. 251-323.

Dysthe, Joseph C.; Carim, Kellie J.; Ruggles, Michael; McKelvey, Kevin S.; Young, Michael K.; Schwartz, Michael K. 2017. Environmental DNA assays for the sister taxa aauger (Sander canadensis) and walleye (Sander vitreus). PLoS ONE 12: e0176459.

Fornwalt, Paula J.; Rocca, Monique E.; Battaglia, Mike A.; Rhoades, Charles C.; Ryan, Michael G. 2017. Mulching fuels treatments promote understory plant communities in three Colorado, USA, coniferous forest types. Forest Ecology and Management. 385: 214-224.

Garcia-Chevesich, Pablo A.; Neary, Daniel G.; Scott, David F.; Benyon, Teresa Reyna, eds. 2017. Forest management and the impact on water resources: A review of 13 countries. IHP - VIII / Technical Document No. 37. Paris, France: United Nations Educational, Scientific, and Cultural Organization (UNESCO), International Hydrological Program. 203 p.

Guzevich, John W.; Thurow, Russell F. 2017. Fine-scale characteristics of fluvial bull trout reeds and adjacent sites in Rapid River, Idaho, 1993-2007. Northwest Science. 91(2): 198-213. http://dx.doi.org/10.3955/046.091.0209.

Hakamada, Rodrigo; Hubbard, Robert M.; Ferraz, Silvio; Stape, Jose Luiz; Lemos, Cristiane. 2017. Biomass production and potential water stress increase with planting density in four highly productive clonal Eucalyptus genotypes. Southern Forests: A Journal of Forest Science. 79(3): 251-257. doi: 10.2989/20702620.2016.1256041.

Hood, Paul R.; Nelson, Kellen N.; Rhoades, Charles C.; Tinker, Daniel B. 2017. The effect of salvage logging on surface fuel loads and fuel moisture in beetle-infested lodgepole pine forests. Forest Ecology and Management. 390: 80-88.

Isaak, Daniel J.; Ver Hoef, Jay M.; Peterson, Erin E.; Horan, Dona L.; Nagel, David E. 2017. Scalable population estimates using spatial-stream-network (SSN) models, fish density surveys, and national geospatial database frameworks for streams. Canadian Journal of Fisheries and Aquatic Sciences. 74: 147-156.

Isaak, D., S. Wenger, E. Peterson, J. Ver Hoef, D. Nagel, C. Luce, S. Hostetler, J. Dunham, B. Roper, S. Wollrab, G. Chandler, D. Horan, S. Parkes-Payne. 2017. The NorWeST summer stream temperature model and scenarios for the western U.S.: A crowd-sourced database and new geospatial tools foster a user community and predict broad climate warming of rivers and streams. Water Resources Research, 53: 9181-9205. https://doi.org/10.1002/2017WR020969.

Isaak, Daniel J.; Wenger, Seth J.; Young, Michael K. 2017. Big biology meets microclimatology: Defining thermal niches of ectotherms at landscape scales for conservation planning. Ecological Applications. doi: 10.1002/eap.1501.

Isaak, Daniel; Young, Michael. 2017. Delineating climate refugia for native aquatic species with big crowd-sourced databases. Mountain Views. December 2017: 3-6.

Neary, Daniel G. 2017. Forest management and water in the United States [Chapter 13]. In: Garcia-Chevesich, Pablo A.; Neary, Daniel G.; Scott, David F.; Benyon, Teresa Reyna, eds. Forest management and the impact on water resources: A review of 13 countries. IHP - VIII / Technical Document No. 37. Paris, France: United Nations Educational, Scientific, and Cultural Organization (UNESCO), International Hydrological Program. p. 181-203.

Petrie, M. D.; Bradford, J. B.; Hubbard, R. M.; Lauenroth, W. K.; Andrews, C. M.; Schlaepfer, D. R. 2017. Climate change may restrict dryland forest regeneration in the 21st century. Ecology. 98(6): 1548-1559.

Rhoades, Charles C.; Minatre, Kerri L.; Pierson, Derek N.; Fegel, Timothy S.; Cotrufo, M. Francesca; Kelly, Eugene F. 2017. Examining the potential of forest residue-based amendments for post-wildfire rehabilitation in Colorado, USA. Scientifica: Article ID 4758316.

Rothlisberger, John D.; Scalley, Tamara Heartsill; Thurow, Russell F. 2017. The role of wild and scenic rivers in the conservation of aquatic biodiversity. International Journal of Wilderness. 23(2): 49-63, 72.

Schwartz, Michael K.; Penaluna, Brooke E.; Wilcox, Taylor M. 2017. eDNA - Not just for fisheries biologists anymore. The Wildlife Professional. November/December 2017. Online: http://wildlife.org/not-just-for-fisheries-biologists-anymore/.

Vorster, Anthony G.; Evangelista, Paul H.; Stohlgren, Thomas J.; Kumar, Sunil; Rhoades, Charles C.; Hubbard, Robert M.; Cheng, Antony S.; Elder, Kelly. 2017. Severity of a mountain pine beetle outbreak across a range of stand conditions in Fraser Experimental Forest, Colorado, United States. Forest Ecology and Management. 389: 116-126.

Vose, James M.; Clark, James S.; Luce, Charles H.; Patel-Weynard, Toral, eds. 2016. Effects of drought on forests and rangelands in the United States: A comprehensive science synthesis. Gen. Tech. Rep. WO-93b. Washington, DC: U.S. Department of Agriculture, Forest Service, Washington Office. 289 p.

2016

Benjankar, Rohan; Tonina, Daniele; Marzadri, Alessandra; McKean, Jim; Isaak, Daniel J. 2016. Effects of habitat quality and ambient hyporheic flows on salmon spawning site selection. Journal of Geophysical Research: Biogeosciences. 121: 1222-1235.

Brooks, Erin S.; Dobre, Mariana; Elliot, William J.; Wu, Joan Q.; Boll, Jan. 2016. Watershed-scale evaluation of the Water Erosion Prediction Project (WEPP) model in the Lake Tahoe basin. Journal of Hydrology. 533: 389-402.

Carim, K. J.; Christianson, K. R.; McKelvey, K. S.; Pate, W. M.; Silver, D. B.; Johnson, B. M.; Galloway, B. T.; Young, M. K.; Schwartz, M. K. 2016. Environmental DNA marker development with sparse biological information: A case study on opossum shrimp (Mysis diluviana). PLoS ONE. 11: e0161664.

Carim, Kellie J.; Dysthe, J. Caleb; Young, Michael K.; McKelvey, Kevin S.; Schwartz, Michael K. 2017. A noninvasive tool to assess the distribution of Pacific lamprey (Entosphenus tridentatus) in the Columbia River basin. PLoS ONE. 12(1): e0169334.

Carim, K. J.; Dysthe, J. C. S.; Young, M. K.; McKelvey, K. S.; Schwartz, M. K. 2016. An environmental DNA assay for detecting Arctic grayling in the upper Missouri River basin, North America. Conservation Genetics Resources. doi: 10.1007/s12686-016-0531-1.

Carim, Kellie J.; McKelvey, Kevin S.; Young, Michael K.; Wilcox, Taylor M.; Schwartz, Michael K. 2016. A protocol for collecting environmental DNA samples from streams. Gen. Tech. Rep. RMRS-GTR-355. Fort Collins, CO: U.S. Department of Agriculture, Forest Service, Rocky Mountain Research Station. 18 p.

Carnie, Ryan; Tonina, Daniele; McKean, James A.; Isaak, Daniel. 2016. Habitat connectivity as a metric for aquatic microhabitat quality: Application to Chinook salmon spawning habitat. Ecohydrology. 9: 982-994.

Cooke, Brian; Elliot, Bill; Miller, Mary Ellen; Finney, Mark; Thompson, Matthew. 2016. Protecting the source: Tools to evaluate fuel treatment cost vs. water quality protection. Science You Can Use Bulletin, Issue 21. Fort Collins, CO: Rocky Mountain Research Station. 9 p.

Cotrufo, M. Francesca; Boot, Claudia M.; Kampf, Stephanie; Nelson, Peter A.; Brogan, Daniel J.; Covino, Tim; Haddix, Michelle L.; MacDonald, Lee H.; Rathburn, Sarah; Ryan-Burkett, Sandra; Schmeer, Sarah; Hall, Ed. 2016. Redistribution of pyrogenic carbon from hillslopes to stream corridors following a large montane wildfire. Global Biogeochemical Cycles. 30: 1348-1355.

Dwire, Kathleen A.; Meyer, Kristen E.; Riegel, Gregg; Burton, Timothy. 2016. Riparian fuel treatments in the western USA: Challenges and considerations. Gen. Tech. Rep. RMRS-GTR-352. Fort Collins, CO: U.S. Department of Agriculture, Forest Service, Rocky Mountain Research Station. 156 p. | Stream Notes (The Technical Newsletter of the National Stream and Aquatic Ecology Center) May 2017 Issue.

Dysthe, Joseph C.; Carim, Kellie J.; Paroz, Yvette M.; McKelvey, Kevin S.; Young, Michael K.; Schwartz, Michael K. 2016. Quantitative PCR assays for detecting loach minnow (Rhinichthys cobitis) and spikedace (Meda fulgida) in the southwestern United States. PLoS One. 11: e0162200.

Elliot, William J. 2016. Development of online tools to support GIS watershed analyses. StreamNotes, August 2016. Fort Collins, CO: U.S. Department of Agriculture, Forest Service, National Stream and Aquatic Ecology Center. p. 8-10.

Gould Gregory K.; Liu, Mingliang; Barber, Michael E.; Cherkauer, Keith A.; Robichaud, Peter R.; Adam, Jennifer C. 2016. The effects of climate change and extreme wildfire events on runoff erosion over a mountain watershed. Journal of Hydrology. 536: 74-91.

Isaak, Daniel J.; Young, Michael K.; Luce, Charles H.; Hostetler, Steven W.; Wenger, Seth J.; Peterson, Erin E.; Ver Hoef, Jay M.; Groce, Matthew C.; Horan, Dona L.; Nagel, David E. 2016. Slow climate velocities of mountain streams portend their role as refugia for cold-water biodiversity. PNAS. 113(16): 4374-4379.

Liu, X.; Wu, J. Q.; Conrad, P. W.; Dun, S.; Todd, C. S.; McNearny, R. L.; Elliot, W. J.; Rhee, H.; Clark, P. 2016. Impact of surface coal mining on soil hydraulic properties. Transactions of the Society for Mining, Metallurgy and Exploration. 338: 381-392.

McKelvey, Kevin S.; Young, Michael K.; Wilcox, Taylor M.; Bingham, Daniel M.; Pilgrim, Kristine L.; Schwartz, Michael K. 2016. Patterns of hybridization among cutthroat trout and rainbow trout in northern Rocky Mountain streams. Ecology and Evolution. doi: 10.1002/ece3.1887.

McKelvey, K. S.; Young, M. K.; Knotek, W. L.; Carim, K. J.; Wilcox, T. M.; Padgett-Stewart, T. M.; Schwartz, M. K. 2016. Sampling large geographic areas for rare species using environmental DNA: A study of bull trout Salvelinus confluentus occupancy in western Montana. Journal of Fish Biology. doi: 10.1111/jfb.12863.

Millar, David J.; Cooper, David J.; Dwire, Kathleen A.; Hubbard, Robert M.; von Fischer, Joseph. 2016. Mountain peatlands range from CO2 sinks at high elevations to sources at low elevations: Implications for a changing climate. Ecosystems. doi: 10.1007/s10021-016-0034-7.

Miller, Mary Ellen; Elliot, William J. 2016. A rapid response database in support of post-fire hydrological modeling. StreamNotes, February 2016. Fort Collins, CO: U.S. Department of Agriculture, Forest Service, National Stream and Aquatic Ecology Center. p. 1-7.

Miller, M. E.; Elliot, W. J.; Billmire, M.; Robichaud, P. R.; Endsley, K. A. 2016. Rapid-response tools and datasets for post-fire remediation: Linking remote sensing and process-based hydrological models. International Journal of Wildland Fire. 25: 1061-1073.

Neary, Daniel G. 2016. Long-term forest paired catchment studies: What do they tell us that landscape-level monitoring does not? Forests. 7: 164.

Neary, Daniel G.; Baillie, Brenda R. 2016. Cumulative effects analysis of the water quality risk of herbicides used for site preparation in the Central North Island, New Zealand. Water. 8: 573.

Petrie, M. D.; Wildeman, A. M.; Bradford, J. B.; Hubbard, R .M.; Lauenroth, W. K. 2016. A review of precipitation and temperature control on seedling emergence and establishment for ponderosa and lodgepole pine forest regeneration. Forest Ecology and Management. 361: 328-338.

Rhoades, Charles C.; Hubbard, Robert M.; Elder, Kelly. 2016. A decade of streamwater nitrogen and forest dynamics after a mountain pine beetle outbreak at the Fraser Experimental Forest, Colorado. Ecosystems. doi: 10.1007/s10021-016-0027-6.

Ruffing, Claire M.; Dwire, Kathleen A.; Daniels, Melinda D. 2016. Carbon pools in stream-riparian corridors: legacy of disturbance along mountain streams of south-eastern Wyoming. Earth Surface Processes and Landforms. 41: 208-223.

Sutfin, Nicholas A.; Wohl, Ellen E.; Dwire, Kathleen A. 2016. Banking carbon: A review of organic carbon storage and physical factors influencing retention in floodplains and riparian ecosystems. Earth Surface Processes and Landforms. 41: 38-60.

Thurow, Russell F. 2016. Life histories of potamodromous fishes [Chapter 4]. In: Morais, Pedro; Daverat, Franchise, eds. An introduction to fish migration. Boca Raton, FL: CRC Press. p. 29-54.

Vose, J., C. Miniat, C. Luce, H. Asbjornsen, P. Caldwell, J. Campbell, G. Gordon, D. Isaak, S. Loheide, and G. Sun 2016. Ecohydrological implications of drought for forests in the United States. Forest Ecology and Management doi:10.1016/j.foreco.2016.03.025.

Wilcox, Taylor M.; McKelvey, Kevin S.; Young, Michael K.; Sepulveda, Adam J.; Shepard, Bradley B.; Jane, Stephen F.; Whiteley, Andrew R.; Lowe, Winsor H.; Schwartz, Michael K. 2016. Understanding environmental DNA detection probabilities: A case study using a stream-dwelling char Salvelinus fontinalis. Biological Conservation. 194: 209-216.

Young MK, Isaak DJ, McKelvey KS, Wilcox TM, Bingham DM, Pilgrim KL, et al. (2016) Climate, demography, and zoogeography predict introgression thresholds in salmonid hybrid zones in Rocky Mountain streams. PLoS ONE 11(11): e0163563. doi:10.1371/journal.pone.0163563.

2015

Aregai, Tecle; Neary, Daniel. 2015. Water quality impacts of forest fires. Pollution Effects and Control. 3(2). doi: http://dx.doi.org/10.4172/2375-4397.1000140.

Baillie, Brenda R.; Neary, Daniel G. 2015. Water quality in New Zealand's planted forests: A review. New Zealand Journal of Forestry Science. 45: 7. doi 10.1186/s40490-015-0040-0.

Baillie, Brenda R.; Neary, Daniel G.; Gous, Stefan; Rolando, Carol A. 2015. Aquatic fate of aerially applied hexazinone and terbuthylazine in a New Zealand planted forest. Journal of Sustainable Watershed Science and Management. 2(1): 118-129.

Bellugi, D., D. G. Milledge, W. E. Dietrich, J. A. McKean, J. T. Perron, E. B. Sudderth, and B. Kazian. 2015. A spectral clustering search algorithm for predicting shallow landslide size and location. J. Geophys. Res. Earth Surf. 120, doi:10.1002/2014JF003137.

Bixby, Rebecca J.; Cooper, Scott D.; Gresswell, Robert E.; Brown, Lee E.; Dahm, Clifford N.; Dwire, Kathleen A. 2015. Fire effects on aquatic ecosystems: An assessment of the current state of the science. Freshwater Science. 34(4): 1340-1350.

Butler, B. W.; Wagenbrenner, N. S.; Forthofer, J. M.; Lamb, B. K.; Shannon, K. S.; Finn, D.; Eckman, R. M.; Clawson, K.; Bradshaw, L.; Sopko, P.; Beard, S.; Jimenez, D.; Wold, C.; Vosburgh, M. 2015. High-resolution observations of the near-surface wind field over an isolated mountain and in a steep river canyon. Atmospheric Chemistry and Physics. 15: 3785-3801.

Dwire, K.A.; Hubbard, R.; Bazan, R. 2015. Comparison of riparian and upland forest stand structure and fuel loads in beetle infested watersheds, southern Rocky Mountains. Forest Ecology and Management. 335 (2015) 194-206. doi:10.1016/j.foreco.2014.09.039.

Elliot, William; Brooks, Erin; Trauemer, Drea Em; Dobre, Mariana. 2015. Extending WEPP technology to predict fine sediment and phosphorus delivery from forested hillslopes. In: Proceedings of the 3rd Joint Federal Interagency Conference (10th Federal Interagency Sedimentation Conference and 5th Federal Interagency Hydrologic Modeling Conference); April 19-23, 2015; Reno, NV. WICP/ACWI. Online: http://acwi.gov/sos/pubs/index.html.

Isaak, D., M. Young, D. Nagel, D. Horan, and M. Groce. 2015. The cold-water climate shield: Delineating refugia for preserving salmonid fishes through the 21st Century. Global Change Biology. 21:2540-2553.

Related Website: Climate Shield Cold-Water Refuge Streams for Native Trout

Lazorchak, James M.; Griffith, Michael B.; Mills, Marc; Schubauer-Berigan, Joseph; McCormick, Frank; Brenner, Richard; Zeller, Craig. 2015. Proof of concept for the use of macroinvertebrates as indicators of polychlorinated biphenyls (PCB) contamination in Lake Hartwell. Environmental Toxicology and Chemistry. 34(6): 1277-1282.

Lisle, T., J.M. Buffington, P.R. Wilcock, and K. Bunte. 2015. Can rapid assessment protocols be used to judge sediment impairment in gravel-bed streams? A commentary. Journal of the American Water Resources Association. 51(2): 373-387.

Neary, Daniel G. 2015. Best practices guidelines for managing water in bioenergy feedstock production. Task 43. Report 2015:TR02. IEA Bioenergy. 125 p.

Pelz, K.A.; Rhoades, C.C., Hubbard, R.M.; Battaglia, M.A.; Smith, F.W. 2015. Species composition influences management outcomes following mountain pine beetle in lodgepole pine-dominated forests. Forest Ecology and Management. 336: 11-20.

Rhoades, Charles C., and Fornwalt, Paula J. 2015. Pile burning creates a fifty-year legacy of openings in regenerating lodgepole pine forests in Colorado. Forest Ecology and Management. 336: 203-209.

Rhoades, Charles C.; Fornwalt, Paula J.; Paschke, Mark W.; Shanklin, Amber; Jonas, Jayne L. 2015. Recovery of small pile burn scars in conifer forests of the Colorado Front Range. Forest Ecology and Management. 347: 180-187.

Ruffing, C.M.; Daniels, M.D.; Dwire, K.A. 2015. Disturbance legacies of historic tie-drives persistently alter geomorphology and large wood characteristics in headwater streams, southeast Wyoming. Geomorphology. 231: 1-14. doi:10.1016/j.geomorph.2014.10.029

Sanchez-Murillo, Ricardo; Brooks, Erin S.; Elliot, William J.; Boll, Jan. 2015. Isotope hydrology and baseflow geochemistry in natural and human-altered watersheds in the Inland Pacific Northwest, USA. Isotopes in Environmental and Health Studies. doi: 10.1080/10256016.2015.1008468.

Schlesinger, William H.; Dietze, Michael C.; Jackson, Robert B.; Phillips, Richard P.; Rhoades, Charles C.; Rustad, Lindsey E.; Vose, James M. 2015. Forest biogeochemistry in response to drought. Global Change Biology. doi: 10.1111/gcb.13105.

Schweinle, Jorg; Rodl, Anne; Borjesson, Pal; Neary, Daniel G.; Langeveld, Johannes W.A.; Berndes, Goran; Cowie, Annette; Ahlgren, Serina; Margni, Manuele; Gaudreault, Caroline; Verschuyl, Jake; Wigley, T. Bently; Vice, Kirsten; Titus, Brian. 2015. Assessing the environmental performance of biomass supply chains: Methods, results, challenges and limitations. Task 43. Report 2015:TR01. IEA Bioenergy. 121 p.

Srivastava, Anurag; Wu, Joan Q.; Elliot, William J.; Brooks, Erin S. 2015. Enhancements to the Water Erosion Prediction Project (WEPP) for modeling large snow-dominated mountainous forest watersheds. Presented at the 2015 EWRI Watershed Management Conference; Reston, VA; August 4-7, 2015. Baltimore, MD: American Society of Civil Engineers, Environmental and Water Resources Institute. 20 p.

Thurow, Russell F. 2015. Accountability across resources [Salmon and Wilderness: Sharing the responsibility, sharing the benefits]. Wilderness Advisory Group News, WAG Tales. Winter 2015: 6, 11.

Wilcox, Taylor M.; Carim, Kellie J.; McKelvey, Kevin S.; Young, Micahel K.; Schwartz, Michael K. 2015. The dual challenges of generality and specificity when developing environmental DNA markers for species and subspecies of Oncorhynchus. PLoS ONE. 10(11): e0142008.

Wilcox, Taylor M.; McKelvey, Kevin S.; Young, Michael K.; Lowe, Winsor H.; Schwartz, Michael K. 2015. Environmental DNA particle size distribution from Brook Trout (Salvelinus fontinalis). Conservation Genetics Resources. 7: 639-641.

Williams, J. E.; Isaak, D. J.; Imhof, J.; Hendrickson, D. A.; McMillan, J. R. 2015. Cold-water fishes and climate change in North America. Reference Module in Earth Systems and Environmental Sciences. doi: 10.1016/B978-0-12-409548-9.09505-1.

2014

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Hill, Brian H.; Kolka, Randall K.; McCormick, Frank H.; Starry, Matthew A. 2014. A synoptic survey of ecosystem services from headwater catchments in the United States. Ecosystem Services. 7: 106-115.

Holsinger, Lisa; Keane, Robert E.; Isaak, Daniel J.; Eby, Lisa; Young, Michael K. 2014. Relative effects of climate change and wildfires on stream temperatures: A simulation modeling approach in a Rocky Mountain watershed. Climatic Change. 124: 191-206. DOI 10.1007/s10584-014-1092-5.

Isaak, D.J. 2014. Blogging fish science. Fisheries 39 (12): 575.

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Isaak, Daniel J.; Peterson, Erin E.; Ver Hoef, Jay M.; Wenger, Seth J.; Falke, Jeffrey A.; Torgersen, Christian E.; Sowder, Colin; Steel, E. Ashley; Fortin, Marie-Josee; Jordan, Chris E.; Ruesch, Aaron S.; Som, Nicholas; Monestiez, Pascal. 2014. Applications of spatial statistical network models to stream data. WIREs Water. doi: 10.1002/wat2.1023.

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Maturana, Oscar; Tonina, Daniele; McKean, James A.; Buffington, John M.; Luce, Charles H.; Caamano, Diego. 2013. Modeling the effects of pulsed versus chronic sand inputs on salmonid spawning habitat in a low-gradient gravel-bed river. Earth Surface Processes and Landforms. doi: 10.1002/esp.3491.

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Hines, Sarah; Brenkert-Smith, Hannah; Champ, Patty; Joyce, Linda; Jeff Lukas; Robichaud, Pete; Ryan-Burkett, Sandra. 2014. Our relationship with a dynamic landscape: Understanding the 2013 Northern Colorado Flood. Science You Can Use Bulletin, Issue 10. Fort Collins, CO: Rocky Mountain Research Station. 15 p.

Homan, J. W., Luce, C. H., McNamara, J. P. and Glenn, N. F., 2011, Improvement of distributed snowmelt energy balance modeling with MODIS-based NDSI-derived fractional snow-covered area data. Hydrological Processes, 25: 650–660. doi: 10.1002/hyp.7857.

Hubbard, R. M., B. J. Bond, R. Senock and M.G. Ryan. 2002. Effects of branch height on leaf gas exchange, branch hydraulic conductance and branch sap flux in open-grown ponderosa pine. Tree Physiology 22: 575-581.

Hubbard, R. M., V. Stiller, M.G. Ryan and J.S. Sperry. 2001. Stomatal conductance and photosynthesis vary linearly with plant hydraulic conductance in ponderosa pine. Plant, Cell and Environment 24: 113-121.

Hubbard, R.M., J.M. Vose, B.D. Clinton, K.J. Elliott, and J.D. Knoepp. 2004. Stand restoration burning in oak-pine forests in the southern Appalachians: effects on aboveground biomass and carbon and nitrogen cycling. Forest Ecology and Management 190:311-321.

Hubbard, R.M., M.G. Ryan, C.P. Giardina and H.R. Barnard. 2004. The effect of fertilization on sap flux and canopy conductance in a Eucalyptus saligna experimental forest. Global Change Biology 10: 427-436.

Hubbard, R.M., M.G. Ryan, K. Elder, and C.C. Rhoades. 2005. Seasonal patterns in soil surface CO2 flux under snow cover in 50 and 300 year old subalpine forests . Biogeochemistry 73:93-107.

Hubbard, Robert M.; Rhoades, Charles C.; Elder, Kelly; Negron, Jose 2013. Changes in transpiration and foliage growth in lodgepole pine trees following mountain pine beetle attack and mechanical girdling. Forest Ecology and Management. 289: 312-317.

Hubbart, J. A., T. E. Link, J. A Gravelle, and W. J. Elliot. 2007. Timber harvest impacts on water yield in the continental/maritime hydroclimate region of the U.S. Journal of Forestry 53(2):169-180.

Ice, G.G.; Neary, D.G.; Adams, P.W. 2004. Effects of wildfire on soils and watershed processes. Journal of Forestry. 102:16-20.

Isaak, D.J. 2014. Blogging fish science. Fisheries 39:575.

Isaak, D.J. 2011. Stream Temperature Monitoring and Modeling: Recent Advances and New Tools for Managers. Stream Notes. Stream Systems Technology Center. July 2011. 7 p.

Isaak, D.J., and D.L. Horan. 2011. An assessment of underwater epoxies for permanently installing temperature sensors in mountain streams. North American Journal of Fisheries Management 31:134-137.

related poster: Global warming of salmon and trout rivers in the northwestern U.S.: Road to ruin or path through purgatory?

related briefing paper: Fishing for Climate Data: How Recent Research is Helping to Forecast Changes in Salmon and Trout Habitat

Isaak, Daniel J.; Thurow, Russell F. 2006. Network-scale spatial and temporal variation in Chinook salmon (Oncorhynchus tshawytscha) redd distributions: patterns inferred from spatially continuous replicate surveys. Canadian Journal of Fisheries and Aquatic Sciences. 63(2): 285-296.

Isaak, D.J., R.F. Thurow, B.E. Rieman, and J.B. Dunham. 2007. Chinook salmon use of spawning patches: relative roles of habitat quality, size, and connectivity. Ecological Applications. 17(2):352-364.

Isaak, Dan; Rieman, Bruce; Horan, Dona. 2009. A watershed-scale monitoring protocol for bull trout. Gen. Tech. Rep. RMRS-GTR-224. Fort Collins, CO: U.S. Department of Agriculture, Forest Service, Rocky Mountain Research Station. 25 p.

Related website: Multiple Regression Stream Temperature Model - with data, maps, methods and related publications

Isaak, Daniel J.; Horan, Dona L.; Wollrab, Sherry P. 2013. A simple protocol using underwater epoxy to install annual temperature monitoring sites in rivers and streams. Gen. Tech. Rep. RMRS-GTR-314. Fort Collins, CO: U.S. Department of Agriculture, Forest Service, Rocky Mountain Research Station. 21 p.

Isaak, Daniel J.; Luce, Charles H.; Rieman, Bruce E.; Nagel, David E.; Peterson, Erin E.; Horan, Dona L.; Parkes, Sharon; Chandler, Gwynne L. 2010. Effects of climate change and wildfire on stream temperatures and salmonid thermal habitat in a mountain river network. Ecological Applications. 20(5): 1350-1371.

Appendices

Related website: Spatial Statistical Stream Temperature Model - with data, maps, methods and related presentations and publications

Isaak, Daniel J.; Muhlfeld, Clint C.; Todd, Andrew S.; Al-Chokhachy, Robert; Roberts, James; Kershner, Jeffrey L.; Fausch, Kurt D.; Hostetler, Steven W. 2012. The past as prelude to the future for understanding 21st-Century climate effects on Rocky Mountain trout. Fisheries. 37(12): 542-556.

Isaak, Daniel J.; Rieman, Bruce E. 2013. Stream isotherm shifts from climate change and implications for distributions of ectothermic organisms. Global Change Biology. 19: 742-751.

Isaak, D. J.; Wollrab, S.; Horan, D.; Chandler, G. 2011. Climate change effects on stream and river temperatures across the northwest U.S. from 1980-2009 and implications for salmonid fishes. Climatic Change. 113: 499-524.

Related Website: Climate Shield Cold-Water Refuge Streams for Native Trout

Istanbulluoglu, E., D. G. Tarboton, R. T. Pack, and C. H. Luce. 2004. Modeling of the interactions between forest vegetation, disturbances, and sediment yields. Journal of Geophysical Research, 109, F01009, doi:10.1029/2003JF000041.

Jalali, Gholam Ali; Akbarian, Hossein; Rhoades, Charles; Yousefzadeh, Hamed. 2012. The effect of the halophytic shrub Lycium ruthenium (Mutt) on selected soil properties of a desert ecosystem in central Iran. Polish Journal of Ecology. 60(4): 845-850

Kauffman, J. Boone; Heider, Chris; Cole, Thomas G.; Dwire, Kathleen A.; Donato, Daniel C. 2011. Ecosystem carbon stocks of micronesian mangrove forests. Wetlands. 31: 343-352.

Kaye, J.P., D. Binkley, and C. Rhoades. 2003. Stable soil nitrogen accumulation and flexible organic matter stoichiometry during primary floodplain succession. Biogeochemistry 63:1-22.

Klutsch, Jennifer G.; Negron, Jose F.; Costello, Sheryl L.; Rhoades, Charles C.; West, Daniel R.; Popp, John; Caissie, Rick. 2009. Stand characteristics and downed woody debris accumulations associated with a mountain pine beetle (Dendroctonus ponderosae Hopkins) outbreak in Colorado. Forest Ecology and Management. 258: 641-649.

Lentile, L.; Morgan, P.; Hardy, C.; Hudak, A.; Means, R.; Ottmar, R.; Robichaud, P.; Kennedy Sutherland, E.; Szymoniak, J.; Way, F.; Fites-Kaufman, J.; Lewis, S.; Mathews, E.; Shovik, H.; Ryan, K. 2007. Value and challenges of conducting rapid response research on wildland fires . Gen. Tech. Rep. RMRS-GTR-193. Fort Collins, CO: U.S. Department of Agriculture, Forest Service, Rocky Mountain Research Station. 11 p.

Lewis, S.A.; J.Q. Wu; P.R. Robichaud. 2005. Assessing burn severity and comparing soil water repellency, Hayman Fire, Colorado. Hydrological Processes 20: 1-16.

Lewis, S.A.; Robichaud, P.R.; Frazier, B.E.; Wu, J.Q.; Laes, D.Y.M. 2008. Using hyperspectral imagery to predict post-wildfire soil water repellency. Geomorphology 95:192-205.

Lewis, Sarah A.; Lentile, Leigh B.; Hudak, Andrew T.; Robichaud, Peter R.; Morgan, Penelope; Bobbitt, Michael J. 2007. Mapping ground cover using hyperspectral remote sensing after the 2003 Simi and Old wildfires in southern California. Fire Ecology. 3(1):109-128.

Liston, Glen E.; Elder, Kelly. 2006. A distributed snow-evolution modeling system (SnowModel). Journal of Hydrometeorology. 7(6): 1259-1276.

Liston, Glen E.; Elder, Kelly 2006. A meteorological distribution system for high-resolution terrestrial modeling (MicroMet). Journal of Hydrometeorology. 7(April): 217-234.

Luce, C.H., Abatzoglou, J.T. and Holden, Z.A., 2013. The Missing Mountain Water: Slower Westerlies Decrease Orographic Enhancement in the Pacific Northwest USA. Science, 342(6164): 1360-1364.

Luce, Charles; Morgan, Penny; Dwire, Kathleen; Isaak, Daniel; Holden, Zachary; Rieman, Bruce 2012. Climate change, forests, fire, water, and fish: Building resilient landscapes, streams, and managers. Gen. Tech. Rep. RMRS-GTR-290. Fort Collins, CO: U.S. Department of Agriculture, Forest Service, Rocky Mountain Research Station. 207 p.

Luce, C. H., Tarboton, D. G. 2004. The application of depletion curves for parameterization of subgrid variability of snow. Hydrological processes. 18(8): 1409-1422

Luce, Charles H.; Tarboton, David G.; Istanbulluoglu, Erkan; Pack, Robert T. 2005. Reply to comment by Jonathan J. Rhodes on "Modeling of the interactions between forest vegetation, disturbances, and sediment yields". Journal of geophysical research. 110(F1): F01013 (3 p.)

Luce, Charles H.; Tonina, Daniele; Gariglio, Frank; Applebee, Ralph 2013. Solutions for the diurnally forced advection-diffusion equation to estimate bulk fluid velocity and diffusivity in streambeds from temperature time series. Water Resources Research. 49: 1-9.

Luce, C. H.; Tarboton, D. G. 2010. Evaluation of alternative formulae for calculation of surface temperature in snowmelt models using frequency analysis of temperature observations. Hydrology and Earth System Sciences. 14: 535-543.

Lugo, Ariel D.; Swanson, Frederick J.; González, Olga Ramos; Adams, Mary Beth; Palik, Brian; Thill, Ronald E.; Brockway, Dale G.; Kern, Christel; Woodsmith, Richard; Musselman, Robert. 2006. Long-term research at the USDA Forest Service''s experimental forests and ranges. BioScience. 56(1): 39-48

Mackey, B.H., Roering, J.J., McKean, J., Crosby, B.T., Dietrich, W.E., Submitted. Long-term landslide response to channel network dynamics: spatial analysis using airborne laser swath mapping, South Fork Eel River, California. American Geophysical Union, Geophysical Research Letters.

Magaña, H.A., and Villareal, T.A. 2006. The effects of environmental factors on the growth rate of Karenia brevis (Davis) G. Hansen and Moestrup. Harmful Algae, 5:192-198.

Magaña, H.A., Contreras, C., and Villareal, T.A. 2003. A historic assessment of Karenia brevis in the Western Gulf of Mexico. Harmful Algae, 2:163-171.

Marzadri, Alessandra; Tonina, Daniele; McKean, James A.; Tiedemann, Matt. 2012. Hyporheic exchange along a river below a dam. In: Mader, Helmut; Kraml, Julia, eds. Proceedings of the 9th International Symphosium on Ecohydraulics (ISE 2012); Vienna, Austria; 17-21 September 2012. Vienna, Austria: Institute of Water Management, Hydrology and Hydraulic Engineering. Online: http://www.ise2012.boku.ac.at/papers/16945_2.pdf.

McDowell, N., H. Barnard, B.J. Bond, T. Hinckley, R.M. Hubbard, H. Ishii, B. Köstner, F. Magnani, J.D. Marshall, F.C. Meinzer, N. Phillips, M.G. Ryan, and D. Whitehead. 2002. The relationship between tree height and leaf area: sapwood area ratio. Oecologia 132:12-20.

McIntosh, B.A., J.R. Sedell, R.F. Thurow, S.E. Clarke, and G.L. Chandler. 2000. Historical changes in pool habitats in the Columbia River basin. Ecological Applications 10(5):1478-1496.

McKean, Jim; Tonina, Daniele. 2013. Bed stability in unconfined gravel bed mountain streams: With implications for salmon spawning viability in future climates. Journal of Geophysical Research: Earth Surface. 118: 1227-1240.

McKean, Jim; Isaak, Dan; Wright, Wayne. 2009. Chapter 2: Stream and riparian habitat analysis and monitoring with a high-resolution terrestrial-aquatic LiDAR. In: Bayer, Jennifer M.; Schei, Jacquelyn L., eds. PNAMP Special Publication: Remote Sensing Applications for Aquatic Resource Monitoring. Cook, WA: Pacific Northwest Aquatic Monitoring Partnership. p. 7-16.

McKean, J.; Tonina, D., Bohn, C.; Wright, C.W.; 2014. Effects of bathymetric lidar errors on a multi-dimensional hydraulic model of flow and bed shear stress in a small clear-water stream. Journal of Geophysical Research - Earth Surface, 119 (3), 644-664, doi:10.1002/2013JF002897.

McKean, Jim; Nagel, Dave; Tonina, Daniele; Bailey, Philip; Wright, Charles Wayne; Bohn, Carolyn; Nayegandhi, Amar. 2009. Remote sensing of channels and riparian zones with a narrow-beam aquatic-terrestrial LIDAR. Remote Sensing. 1: 1065-1096.

McKean, J.; J. Roering. 2004. Objective landslide detection and surface morphology mapping using high-resolution airborne laser altimetry. Geomorphology, 57, 331-351.

McKean, J.A., D.J. Isaak, and C.W. Wright. 2008. Geomorphic controls on salmon nesting patterns described by a new, narrow-beam terrestrial-aquatic lidar. Frontiers in Ecology and the Environment. 6:125-130.

McKean, Jim; Isaak, Dan; Wright, Wayne 2009. Improving stream studies with a small-footprint green lidar. Eos. 90(39): 341-342.

Meyer, Kristen E.; Dwire, Kathleen A.; Champ, Patricia A.; Ryan, Sandra E.; Riegel, Gregg M.; Burton, Timothy A. 2012. Burning questions for managers: Fuels management practices in riparian areas. Fire Management Today. 72(2): 16-23.

Montesi, J., K. Elder, R. A. Schmidt, and R. Davis, 2004, Sublimation of intercepted snow within a subalpine canopy at two elevations, J. Hydromet., 5, 763-773.

Montgomery, D.R., Schmidt, K.M., Dietrich, W.E., McKean, J. Accepted With Revisions. Instrumental record of debris flow initiation during natural rainfall. American Geophysical Union, Journal of Geophysical Research.

Mountjoy, J.J., McKean, J., Barnes, P.M., Pettinga, J.R., 2009. Terrestrial-style slow-moving earthflow kinematics in a submarine landslide complex. Marine Geology, v. 267, 114-127.

Musselman, Robert C.; Lefohn, Allen S.; Massman, William J.; Heath, Robert L. 2006. A critical review and analysis of the use of exposure- and flux-based ozone indices for predicting vegetation effects. Atmospheric Environment. 40: 1869-1888.

Musselman, R.C.; Korfmacher, J.L. 2007. Air quality and snow chemistry at a snowmobile staging area in a Rocky Mountain subalpine forest, Snowy Range, Wyoming. Environmental Monitoring and Assessment. 131:321-334.

Musselman, R. C.; Massman, W. J.; Frank, J. M.; Korfmacher, J. L. 2005. The temporal dynamics of carbon dioxide under snow in a high elevation Rocky Mountain subalpine forest and meadow. Arctic, Antarctic, and Alpine Research. 37(4): 527-538.

Musselman, R.C.; W.L. Slauson. 2004. Water chemistry of high elevation Colorado lakes. Biogeochemistry 71: 387-414.

Musselman, Robert C.; Shepperd, Wayne D.; Smith, Frederick W.; Asherin, Lance A.; Gee, Brian W. 2012. Response of transplanted aspen to irrigation and weeding on a Colorado reclaimed surface coal mine. Res. Pap. RMRS-RP-101. Fort Collins, CO: U.S. Department of Agriculture, Forest Service, Rocky Mountain Research Station. 20 p.

Nagel, D., 2005. Estimating Valley Confinement with DEM Data to Support Cutthroat Trout Research. 2005 Resource Management Tools and Geospatial Conference, Phoenix, Arizona, April 18 – 22.

Nagel, D., 2007. Comparison of Two Models for Identifying Low Gradient, Unconfined Streams and Valley Bottom Extent, In Support of Stream Temperature Modeling Associated with Fire Effects. FS/BLM Geospatial 2007, Portland, OR.

Nagel, D., C. Luce, and B. Gutiérrez Teira, 2004. Use of Thematic Mapper Satellite Imagery, Hemispherical Canopy Photography, and Digital Stream Lines to Predict Stream Shading in the Boise River Basin. The 19th Annual Northwest GIS Users Conference, Sun Valley, Idaho, September 26-29, 2004.

Nagel, D., C. Luce, J. King, B. Rieman and J. Dunham, 2003. Debris Flow Mapping Through Time, Data Management using ArcGIS and Implications for Fish Research. FS Geospatial ’03, Colorado Springs, CO.

Nagel, D., C. Luce., D. Isaak, and B. Rieman, 2007. Toward Stream Temperature Prediction at the Drainage Basin Scale, A GIS and Remote Sensing Approach. The 22nd Annual Northwest GIS Users’ Conference and Training

Nagel, D., J. Buffington, and D. Isaak, 2006. Comparison of Methods for Estimating Stream Channel Gradient Using GIS. The 21st Annual Northwest GIS Users’ Conference and Training, Spokane, WA, September 13-15.

Neary, D.G. 2006. A global view of forest fires and desertification: Environmental and socio-economic consequences. Conferência Internacional sobre Incêndios e Desertificaçã, Lisbon, Portugal, 30 October 2006, Comissão Nacional de Coordenação do PANCD (Programa de Acção Nacional de Combate à Desertificação), General Directorat of Forestry Resources, Portugal. Programa de Acção Nacional de Combate à Desertificação Proceedings. 4 p

Neary, Daniel G. 2015. Best practices guidelines for managing water in bioenergy feedstock production. Task 43. Report 2015:TR02. IEA Bioenergy. 125 p.

Neary, Daniel G. 2016. Long-term forest paired catchment studies: What do they tell us that landscape-level monitoring does not? Forests. 7: 164.

Neary, Daniel G.; Baillie, Brenda R. 2016. Cumulative effects analysis of the water quality risk of herbicides used for site preparation in the Central North Island, New Zealand. Water. 8: 573.

Neary, D.G.; Gottfried, G.J. Beyers, J.L.; Ffolliott, P.F. 2006. Floods and sediment yields from recent wildfires in Arizona. Proceedings of the 8th Federal Interagency Sediment Conference, Las Vegas, NV April 3-6, 2006. CD-ROM

Neary, D.G.; Gottfried, G.J.; Ffolliott, P.F. 2006. Effects of prescribed fire on oak savannas in the American Southwest. In: Viegas, D.X. (ed.) Proceedings of the 5th International Conference on Forest Fire Research. CD ROM, Elsevier, Amsterdam, The Netherlands. 13 p.

Neary, D.G.; Overby, S.T. 2006. Wildfire and post-fire erosion impacts on forest ecosystem carbon and nitrogen: an analysis. In: Viegas, D.X. (ed.) Proceedings of the 5th International Conference on Forest Fire Research. CD ROM, Elsevier, Amsterdam, The Netherlands. 12 p.

Neary, Daniel G.; Ryan, Kevin C.; DeBano, Leonard F., eds. 2005. (revised 2008). Wildland fire in ecosystems: effects of fire on soils and water. Gen. Tech. Rep. RMRS-GTR-42-vol.4. Ogden, UT: U.S. Department of Agriculture, Forest Service, Rocky Mountain Research Station. 250 p.

Neary, Daniel G.; Medina, Alvin L.; Rinne, John N. 2012. Synthesis of Upper Verde River research and monitoring 1993-2008. Gen. Tech. Rep. RMRS-GTR-291. Fort Collins, CO: U.S. Department of Agriculture, Forest Service, Rocky Mountain Research Station. 296 p.

Related Documents: Verde River Synthesis GTR Memo | Upper Verde River: Review of Stream-Riparian Monitoring Efforts Conducted by the U.S. Forest Service Rocky Mountain Research Station

Nelson, Monique LaPerriere; Rhoades, Charles C.; Dwire, Kathleen A. 2011. Influence of bedrock geology on water chemistry of slope wetlands and headwater streams in the southern Rocky Mountains. Wetlands. 31: 251-261.

Neville, H. M.; Isaak, D. J.; Dunham, J. B.; Thurow, R. F.; Rieman, B. E. 2006. Fine-scale natal homing and localized movement as shaped by sex and spawning habitat in Chinook salmon: Insights from spatial autocorrelation analysis of individual genotypes. Molecular Ecology. 15: 4589-4602.

Neville, H., Isaak, D., Thurow, R., Dunham, J., Rieman, B. 2006. Microsatellite variation reveals weak genetic structure and retention of genetic variability in threatened Chinook salmon (Onchorynchus tshawytscha) within a Snake River watershed. Conservation Genetics. DOI 10.1007/s10592-006-9155-4.

Otto, M.S.G., Hubbard, R.M., Binkley, D., Stape, J.L., 2014. Dominant clonal Eucalyptus grandis x urophylla trees use water more efficiently. For. Ecol. Manage. 328, 117-121.

Overton, C. Kerry; Wollrab, Sherry P.; Roberts, Bruce C.; Radko, Michael A. 1997. R1/R4 (Northern/Intermountain Regions) fish and fish habitat standard inventory procedures handbook. Gen. Tech. Rep. INT-GTR-346. Ogden, UT: U.S. Department of Agriculture, Forest Service, Intermountain Research Station. 73 p.

Overton, C. Kerry; Chandler, Gwynne L.; Pisano, Janice A. 1994. Northern/Intermountain Regions' fish habitat inventory: grazed, rested, and ungrazed reference stream reaches, Silver King Creek, California. Gen. Tech. Rep. INT-GTR-311. Ogden, UT: U.S. Department of Agriculture, Forest Service, Intermountain Research Station. 27 p.

Overton, C. Kerry; McIntyre, John D.; Armstrong, Robyn; Whitwell, Shari L.; Duncan, Kelly A. 1995. User's guide to fish habitat: descriptions that represent natural conditions in the Salmon River Basin, Idaho. Gen. Tech. Rep. INT-GTR-322. Ogden, UT: U.S. Department of Agriculture, Forest Service, Intermountain Research Station. 142 p.

Overton, C. Kerry; Radko, Michael A.; Nelson, Rodger L. 1993. Fish habitat conditions: using the Northern/Intermountain Regions'' inventory procedures for detecting differences on two differently managed watersheds. Gen. Tech. Rep. INT-300. Ogden, UT: U.S. Department of Agriculture, Forest Service, Intermountain Research Station. 14 p.

Perron, T., Dietrich, W., Howard, A., McKean, J., Pettinga, J. 2003. Ice-driven creep on Martian debris slopes. Geophysical Research Letters, 30(14), 1747, doi:10.1029/2003GL017603.

Peterson, Douglas P.; Rieman, Bruce E.; Dunham, Jason B.; Fausch, Kurt D.; Young, Michael K. 2007. Analyzing tradeoffs between the threat of invasion by brook trout and effects of intentional isolation for native westslope cutthroat trout. In: Carline, R.F.; LoSapio, C., eds. 2007. Sustaining wild trout in a changing world; proceedings of Wild Trout IX symposium; 2007 October 9-12; West Yellowstone, Montana: 51-57.

Peterson, Douglas P.; Wenger, Seth J.; Rieman, Bruce E.; Isaak, Daniel J. 2013. Linking climate change and fish conservation efforts using spatially explicit decision support tools. Fisheries. 38(3): 112-127 + 58 pages of appendices.

Peterson, Erin E.; Ver Hoef, Jay M.; Isaak, Dan J.; Falke, Jeffrey A.; Fortin, Marie-Josee; Jordan, Chris E.; McNyset, Kristina; Monestiez, Pascal; Ruesch, Aaron S.; Sengupta, Aritra; Som, Nicholas; Steel, E. Ashley; Theobald, David M.; Torgersen, Christian E.; Wenger, Seth J. 2013. Modelling dendritic ecological networks in space: An integrated network perspective. Ecology Letters. doi: 10.1111/efe.12084.

Rader, Russel B.; Belish, Timberley; Young, Michael K.; Rothlisberger, John 2007. The scotopic visual sensitivity of four species of trout: A comparative study. Western North American Naturalist. 67(4): 524-537.

Reese, H., Lillesand, T., Nagel, D., Stewart, J., Goldmann, R., Simmons, T., Chipman, J., and Tessar, P., 2002. Statewide Land Cover Derived from Multi-seasonal Landsat TM Data: A Retrospective of the WISCLAND Project. Remote Sensing of Environment. 82(2-3):224-237.

Reeves, G.H., P.A. Bisson, B.E. Rieman, L.E. Benda. 2006. Postfire Logging in Riparian Areas. Conservation Biology. 20(4):994-1004.

Rhoades, C.C. 2007. Influence of American chestnut (Castanea dentata) on chemistry and nitrogen availability of fine and coarse-texture soils. Pedobiologia. 50:553-562.

Rhoades, C.C. 1995. Seasonal pattern of nitrogen mineralization and soil moisture beneath Faidherbia albida (syn. Acacia albida) in central Malawi. Agroforestry Systems 29:133-145.

Rhoades, C.C. 1997. Single-tree influence on soil properties in agroforestry systems: Lessons from natural and savanna ecosystems. Agroforestry Systems 35:71-94.

Rhoades, C.C., T.G. Barnes, and B.E. Washburn. 2002. Prescribed fire and herbicide effects on soil processes during barrens restoration. Restoration Ecology 10:1-9.

Rhoades, C. C.; Battaglia, M. A.; Rocca, M. E.; Ryan, M. G. 2012. Short- and medium-term effects of fuel reduction mulch treatments on soil nitrogen availability in Colorado conifer forests. Forest Ecology and Management. 276: 231-238.

Rhoades, C. and D. Binkley. 1996. Factors influencing soil pH changes beneath Eucalyptus and Albizia plantations in Hawaii. Forest Ecology and Management. 80:47-56.

Rhoades, C. and D. Binkley. 1992. Spatial extent of altered soil properties associated with mixed species forest stands of N2-fixing red alder and Douglas-fir. Canadian Journal of Forest Research 22:1434-1437.

Rhoades, Charles; Binkley, Dan; Oskarsson, Hlynur; Stottlemyer, Robert. 2008. Soil nitrogen accretion along a floodplain terrace chronosequence in northwest Alaska: Influence of the nitrogen-fixing shrub Shepherdia Canadensis. Ecoscience. 15(2): 223-230.

Rhoades, C.C., S.L. Brosi, A.J. Dattilo, and P. Vincelli. 2003. Soil compaction and moisture controls on incidence of Phytophthora root rot on American Chestnut seedlings. Forest Ecology and Management 184:47-54.

Rhoades, C.C. and D.C. Coleman. 1999. Nitrogen mineralization and nitrification following land conversion in montane Ecuador. Soil Biology and Biochemistry 31:1347-1354.

Rhoades, C.; Elder, K.; Greene, E. 2010. The influence of an extensive dust event on snow chemistry in the southern Rocky Mountains. Arctic, Antarctic, and Alpine Research. 42(1): 98-105.

Rhoades, C.C., G.E. Eckert, and D.C. Coleman. 1998. Effect of pasture trees on soil nitrogen availability and soil organic matter cycling: Implications for montane forest restoration. Restoration Ecology 6:262-270.

Rhoades, C.C., G.E. Eckert, and D.C. Coleman. 2000. Soil carbon changes among forest, agriculture and secondary vegetation in lower montane Ecuador. Ecological Applications 10:497-505.

Rhoades, Charles C.; Entwistle, Deborah; Butler, Dana. 2011. The influence of wildfire extent and severity on streamwater chemistry, sediment and temperature following the Hayman Fire, Colorado. International Journal of Wildfire Science. 20: 430-442.

Rhoades, Charles C., and Fornwalt, Paula J. 2015. Pile burning creates a fifty-year legacy of openings in regenerating lodgepole pine forests in Colorado. Forest Ecology and Management. 336: 203-209.

Rhoades, Chuck; Loftis, David; Lewis, Jeffrey; Clark, Stacy. 2009. The influence of silvicultural treatments and site conditions on American chestnut (Castanea dentata) seedling establishment in eastern Kentucky, USA. Forest Ecology and Management. 258: 1211-1218.

Rhoades, Charles C.; Meier, A. J.; Rebertus, A. J. 2004. Soil properties in fire-consumed log burnout openings in a Missouri oak savanna. Forest ecology and management. 192(2/3): 277-284.

Rhoades, Charles C.; McCutchan, James H., Jr.; Cooper, Leigh A.; Clow, David; Detmer, Thomas M.; Briggs, Jennifer S.; Stednick, John D.; Veblen, Thomas T.; Ertz, Rachel M.; Likens, Gene E.; Lewis, William M., Jr. 2013. Biogeochemistry of beetle-killed forests: Explaining a weak nitrate response. PNAS. 110(5): 1756-1760.

Rhoades, C. C.; Miller, S. P.; Skinner, D. L. 2005. Forest vegetation and soil patterns across glade-forest ecotones in the Knobs region of northeastern Kentucky, USA. American Midland Naturalist. 154(1): 1-10.

Rhoades, C.C., T.M. Nissen, and J.S. Kettler. 1998. Soil nitrogen dynamics in alley cropping and no-till systems on ultisols of the Georgia Piedmont, USA. Agroforestry Systems 39:31-44.

Rhoades, C.C., H. Oskarsson, D. Binkley, and R. Stottlemyer. 2001. Alder (Alnus crispa) effects on soils vary with ecosystem type along the Agashashok River, northwest Alaska. Ecoscience. 8(1):89-95.

Rhoades, C.C. and A.C. Park. 2001. Pre-blight abundance of American chestnut in Kentucky. Journal of the American Chestnut Foundation 15(1):36-44.

Rhoades, C., R.L. Sanford Jr., and D.B. Clark. 1994. Gender-dependent influences on soil phosphorus by the dioecious lowland tropical tree Simarouba amara. Biotropica 26:362-368.

Rhoades, C.C. and M.M. Shea. 2003. Forest type influences response of vegetation and soil chemistry to edge clearing in dry glades (Kentucky). Ecological Restoration 21:42-43.

Rieman, Bruce E.; Hessburg, Paul F.; Luce, Charles; Dare, Matthew R. 2010. Wildfire and management of forests and native fishes: Conflict or opportunity for convergent solutions?. BioScience. 60(6): 460-468.

Rieman, Bruce E.; Isaak, Daniel J. 2010. Climate change, aquatic ecosystems, and fishes in the Rocky Mountain West: implications and alternatives for management. Gen. Tech. Rep. RMRS-GTR-250. Fort Collins, CO: U.S. Department of Agriculture, Forest Service, Rocky Mountain Research Station. 46 p.

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Robichaud, P. R., W. J. Elliot, F. B. Pierson, D. E. Hall, C. A. Moffet and L. E. Ashmun. 2007. Erosion Risk Management Tool (ERMiT) user manual (version 2006.01.18). Gen. Tech. Rep. RMRS-GTR-188. Fort Collins, CO: U.S. Department of Agriculture, Forest Service, Rocky Mountain Research Station. 24 p.

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Ryan, Sandra E.; Emmett, William W. 2002. The nature of flow and sediment movement in Little Granite Creek near Bondurant, Wyoming. Gen. Tech. Rep. RMRS-GTR-90. Ogden, UT: U.S. Department of Agriculture, Forest Service, Rocky Mountain Research Station. 48 p.

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