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322 East Front St., Ste 401

Boise, ID 83702

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Rocky Mountain Research Station Home >Science Program Areas > Air, Water and Aquatics > Publications



Air, Water and Aquatic Environments Science Program

most recent Publications

2014 | all publications

2014

 

Hill, Brian H.; Kolka, Randall K.; McCormick, Frank H.; Starry, Matthew A. 2014. A synoptic survey of ecosystem services from headwater catchments in the United States. Ecosystem Services. 7: 106-115.

 

Holsinger, L., R. Keane, D. Isaak, L. Eby, M. Young. 2014. Relative effects of climate change and wildfires on stream temperatures: a simulation modeling approach in a Rocky Mountain watershed. Climatic Change. DOI 10.1007/s10584-014-1092-5.

 

Isaak, Daniel J.; Peterson, Erin E.; Ver Hoef, Jay M.; Wenger, Seth J.; Falke, Jeffrey A.; Torgersen, Christian E.; Sowder, Colin; Steel, E. Ashley; Fortin, Marie-Josee; Jordan, Chris E.; Ruesch, Aaron S.; Som, Nicholas; Monestiez, Pascal. 2014. Applications of spatial statistical network models to stream data. WIREs Water. doi: 10.1002/wat2.1023.

 

Lemoine, Michael; Young, Michael K.; McKelvey, Kevin S.; Eby, Lisa; Pilgrim, Kristine L.; Schwartz, Michael K. 2014. Cottus schitsuumsh, a new species of sculpin (Scorpaeniformes: Cottidae) in the Columbia River basin, Idaho-Montana, USA. Zootaxa. 3755(3): 241-258.

 

Wang, Li; Wu, Joan Q.; Elliot, William J.; Feidler, Fritz R.; Lapin, Sergey. 2014. Linear diffusion-wave channel routing using a discrete Hayami convolution method. Journal of Hydrology. 509: 282-294.

 

 

 

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awae Publications

 

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A

Adams, S. B., D. A. Schmetterling, and M. K. Young.  2005.  Instream movement by boreal toads (Bufo boreas boreas).  Herpetological Review 36:  27-33.

 

Andrews, Danielle M.; Barton, Christopher D.; Kolka, Randall K.; Rhoades, Charles C.; Dattilo, Adam J. 2011. Soil and water characteristics in restored canebrake and forest riparian zones. Journal of the American Water Resources Association (JAWRA). 47(4): 772-784.

 

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B

 

Barry, Jeffrey J.; Buffington, John M.; King, John G. 2004. A general power equation for predicting bed load transport rates in gravel bed rivers. Water resources research. 40: W10401 (22 p.)

 

Barry, Jeffrey J.; Buffington, John M.; King, John G. 2005. Reply to comment by Claude Michel on "A general power equation for predicting bed load transport rates in gravel bed rivers". Water resources research. 41(7): W0716 (2 p.)

 

Beechie, T.J., D.A. Sear, J.D. Olden, G.R. Pess, J.M. Buffington, H.J. Moir, P. Roni, and M.M. Pollock. 2010. Process-based principles for restoring river ecosystems. BioScience 60(3): 209-222.

 

Bellugi, Dino; Dietrich, William E.; Stock, Jonathan; McKean, Jim; Kazian, Brian; Hargrove, Paul. 2011. Spatially explicit shallow landslide susceptibility mapping over large areas. In: Genevois, R.; Hamilton, D. L.; Prestininzi, A., eds. Proceedings of the 5th International Conference on Debris-Flow Hazards Mitigation: Mechanics, Prediction and Assessment; Padua, Italy; June 7-11, 2011. Rome, Italy: Casa Editrice Universita La Sapienza, Italian Journal of Engineering Geology and Environment-Book. p. 759-768.

 

Bisson, P.A.; Rieman, B.E.; Luce, C.; Hessburg, P.F.; Lee, D.C.; Kershner, J.L.; Reeves, G.H.; Gresswell, R.E. 2003. Fire and aquatic ecosystems of the Western USA: current knowledge and key questions. Forest Ecology and Management. 178: 213-229.

 

Bisson, Peter A.; Montgomery, David R.; Buffington, John M. 2006. Valley segments, stream reaches, and channel units. In: Hauer, F. R.; Lamberti, G. A., eds. Methods in Stream Ecology. Second Edition. San Diego, CA: Academic Press: 23-49.

 

Black, Thomas A.; Luce, Charles H. 2013. Measuring water and sediment discharge from a road plot with a settling basin and tipping bucket. Gen. Tech. Rep. RMRS-GTR-287. Fort Collins, CO: U.S. Department of Agriculture, Forest Service, Rocky Mountain Research Station. 38 p.

 

Brooks, P., D. McKnight, and K. Elder, 2004, Carbon limitation of soil respiration under winter snowpacks: potential feedbacks between growing season and winter carbon fluxes Global Change Biology, 11, 231-238.

 

Brookshire, E. N. J. and K. A. Dwire. 2003. Controls on patterns of coarse organic particle retention in headwater streams. Journal of the North American Benthological Society 22(1): 17-34.

 

Buffington, J. M.; Montgomery, D. R.  2013.  Geomorphic classification of rivers. In: Shroder, J.; Wohl, E., ed. Treatise on Geomorphology; Fluvial Geomorphology, Vol. 9. San Diego, CA: Academic Press. p. 730-767.

 

Buffington, J.M., 2012. Changes in channel morphology over human time scales. In: Church, M., Biron, P.M., Roy, A.G. (Eds.), Gravel-Bed Rivers: Processes, Tools, Environments. Wiley, Chichester, UK, pp. 435-463.

 

Buffington, J.M., D.R. Montgomery, and H.M. Greenberg. 2004. Basin-scale availability of salmonid spawning gravel as influenced by channel type and hydraulic roughness in mountain catchments.  Canadian Journal of Fisheries and Aquatic Sciences. 61:2085-2096.  Erratum

 

Buffington, John M.; Roper, Brett B.; Archer, Eric; Moyer, Chris, 2009. REPLY TO DISCUSSION - The Role of Observer Variation in Determining Rosgen Stream Types in Northeastern Oregon Mountain Streams. Journal of the American Water Resources Association. 45 (5), 1298-1312.

 

Buffington, John M.; Tonina, Daniele  2009.  Hyporheic exchange in mountain rivers II: Effects of channel morphology on mechanics, scales, and rates of exchange. Geography Compass. 3(3): 1038-1062.

 

Bunte, Kristin; Abt, Steven R.; Potyondy, John P.; Ryan, Sandra E. 2004. Measurement of coarse gravel and cobble transport using portable bedload traps. Journal of hydraulic engineering. Vol. 130, no. 9 (Sept. 2004): p. 879-893.

 

Burke, M., K. Jorde, J.M. Buffington, J. Braatne, and R. Benjakar. 2006. Spatial distribution of impacts to channel bed mobility due to flow regulation, Kootenai River, USA. Proceedings of the 8th Federal Interagency Sedimentation Conference, Reno, NV, April 2-6, 2006.

 

Burke, M., K. Jorde, and J.M. Buffington, published online November 5 2008, Application of a hierarchical framework for assessing environmental impacts of dam operation: changes in hydrology, channel hydraulics, bed mobility and recruitment of riparian trees in a western North American river, Journal of Environmental Management, doi: 10.1016/j.jenvman.2008.1007.0222.

 

Bytnerowicz, A.; O. Badea.; F. Popescu; R. Musselman; M. Tanase; I. Barbu; W. Frączek; N. Gembasu; A. Surdu; F. Danescu; D. Postelnicu; R. Cenusa; C. Vasile. 2005. Air pollution, precipitation chemistry and forest health in the Retazat Mountains, Southern Carpathians, Romania. Environmental Pollution. 137: 546-567.

 

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C

Caamaño, D., P. Goodwin, and J.M. Buffington. 2012. Flow structure through pool-riffle sequences and a conceptual model for their sustainability in gravel-bed rivers. River Research and Applications 28(3): 377-389.

 

Caamaño, D., P. Goodwin, J.M. Buffington, J.C.P. Liou, and S. Daley-Laursen, 2009, A unifying criterion for the velocity reversal hypothesis in gravel-bed rivers, Journal of Hydraulic Engineering 135(1): 66-70, doi: 10.1061/(ASCE)0733-9429(2009)135:1(66).

 

Calkin, David E.; Hyde, Kevin D.; Robichaud, Peter R.; Jones, J. Greg; Ashmun, Louise E.; Loeffler Dan. 2007. Assessing post-fire values-at-risk with a new calculation tool. Gen. Tech. Rep. RMRS-GTR-205. Fort Collins, CO: U.S. Department of Agriculture, Forest Service, Rocky Mountain Research Station. 32 p.

 

Cline, D., K. Elder, B. Davis, J. Hardy, G.E. Liston, D. Imel, S.H. Yueh, A.J. Gasiewski, G. Koh, R.L. Armstrong, M. Parsons, Overview of the NASA cold land processes field experiment (CLPX-2002), Proc. Int. Symp., 2002 October 24-25, China, Soc. of Photo-Opt. Instrumentation Engineers, Vol. 4894: 361-372, 2003.

 

Collins, B. J.; Rhoades, C. C.; Battaglia, M. A.; Hubbard, R. M. 2012. The effects of bark beetle outbreaks on forest development, fuel loads and potential fire behavior in salvage logged and untreated lodgepole pine forests. Forest Ecology and Management. 284: 260-268.

 

Collins, B.J.; Rhoades, C.C.; Hubbard, R.M.; Battaglia, M.A. 2011. Tree regeneration and future stand development after bark beetle infestation and harvesting in Colorado lodgepole pine stands. Forest Ecology and Management. 261: 2168–2175.

 

Collins, Byron J.; Rhoades, Charles C.; Underhill, Jeffrey; Hubbard, Robert M. 2010. Post-harvest seedling recruitment following mountain pine beetle infestation of Colorado lodgepole pine stands: A comparison using historic survey records. Canadian Journal of Forest Research. 40: 2452-2456.

 

Conroy, W. J.; Hotchkiss, R. H.; Elliot, W. J. 2006. A coupled upland-erosion and instream hydrodynamic-sediment transport model for evaluating sediment transport in forested watersheds. Transactions of the American Society of Agricultural and Biological Engineers. 49(6): 1-10.

 

Copeland, N.S., Sharratt, B.S., Wu, J.Q., Foltz, R.B., Dooley, J.H., 2009. A wood-strand material for wind erosion control: effects on total sediment loss, PM10 vertical flux, and PM10 loss. J. Environ. Qual. 37:1–10. doi: 10.2134/jeq2008.0115.

 

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D

 

Dattilo, A.J. and C.C. Rhoades. 2005. River cane (Arundinaria gigantea) establishment for riparian restoration in Central Kentucky. Restoration Ecology 13:615-621.

 

Deems, J., S. R. Fassnacht, and K. Elder, 2006, Fractal distribution of snow depth from LiDAR data, J. Hydromet., 7, 285-297.

 

Dietrich, W.E., McKean, J., Bellugi, D., Perron, T., 2007. The prediction of shallow landslide location and size using a multidimensional landslide analysis in a digital terrain model. 4th Intl. Debris Flow Conf., Chengdu, China. Sept. 10-13.

 

Dillon, Gregory K.; Holden, Zachery A.; Morgan, Penelope; Crimmins, Michael A.; Heyerdahl, Emily K.; Luce, Charles H. 2011. Both topography and climate affected forest and woodland burn severity in two regions of the western US, 1984 to 2006. Ecosphere. 2(12): 130. doi: 10.1890/ES11-00271.1.

 

Douglas P. Peterson, Bruce E. Rieman, Michael K. Young, and James A. Brammer. 2010. Modeling predicts that redd trampling by cattle may contribute to population declines of native trout. Ecological Applications. 20:954–966.

 

Dun, S.; J.Q. Wu; W.J. Elliot; P.R. Robichaud; D.C. Flanagan. 2006. Adapting the Water Erosion Prediction Project (WEPP) model to forest conditions. Written for presentation at the 2006 ASABE Annual International Meeting. Sponsored by ASABE, Portland Convention Center, Portland, OR. 9 - 12 July 2006. ASABE Paper No. 062150. American Society of Agricultural and Biological Engineers.

 

Dunham, J.B., B.E. Rieman, and G.L. Chandler. 2001. Development of field-based models of suitable thermal regimes for interior Columbia Basin salmonids. Final Report to U.S. Environmental Protection Agency, Seattle, WA. Interagency Agreement #00-IA-11222014-521.

 

Dunham, J., B. Rieman and G. Chandler.  2003.  Influences of temperature and environmental variables on the distribution of bull trout within streams at the southern margin of its range.  North American Journal of Fisheries Management 23:894-904.

 

Dunham, J., G. Chandler, B. Rieman, and D. Martin.  2005.  Measuring stream temperature with digital data loggers: A user's guide.  General Technical Report.  RMRSGTR-150WWW.  Fort Collins, CO: U.S. Department of Agriculture, Forest Service, Rocky Mountain Research Station.  15pp.

 

Dunham, J.B., A.E. Rosenberger, C.H. Luce, and B.R. Rieman. 2007. Influences of wildfire and channel reorganization on spatial and temporal variation in stream temperature and the distribution of fish and amphibians. Ecosystems. 10:335-346.

 

Dunham, Jason B.; Chandler, G. L. 2001. Models to predict suitable habitat for juvenile bull trout in Washington state. Boise, ID: U.S. Department of Agriculture, Forest Service, Rocky Mountain Research Station. Final Report for cooperative agreement #134100H001. 75 p.

 

Dutra, Emanuel; Balsamo, Gianpaolo; Viterbo, Pedro; Miranda, Pedro M. A.; Beljaars, Anton; Schar, Christoph; Elder, Kelly. 2010: An improved snow scheme for the ECMWF land surface model: Description and offline validation. Journal of Hydrometeorology. 11: 899-916.

 

Dwire, K. A. and J. B. Kauffman. 2003. Fire and riparian ecosystems in landscapes of the western USA. Forest Ecology and Management 178 (1-2): 61-74.

 

Dwire, K. A., J. B. Kauffman, and J. Baham. 2006. Plant species distribution in relation to water table depth and soil redox potential in montane riparian meadows. Wetlands 26 (1): 131 – 146.

 

Dwire, K. A., J. B. Kauffman, E. N. J. Brookshire and J. Baham. 2004. Plant biomass and species composition along an environmental gradient in montane riparian meadows. Oecologia 139(2): 309-317.

 

Dwire, Kathleen A.; Ryan, Sandra E.; Shirley, Laura J.; Lytjen, Danna; Otting, Nick; Dixon, Mark K. 2006. Influence of herbivory on regrowth of riparian shrubs following a wildland fire. Journal of the American Water Resources Association. 42 (1): 201-212.g

 

Dwire, K.A., C.C. Rhoades, and M.K. Young. 2006. Potential effects of fuel management activities on riparian areas. Elliot, W.J. and Audin, L.J., (Eds.). Cumulative Watershed Effects of Fuels Management in the Western United States.

 

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E

 

Eiriksson, David; Whitson, Michael; Luce, Charles H.; Marshall, Hans Peter; Bradford, John; Benner, Shawn G.; Black, Thomas; Hetrick, Hank; McNamara, James P.  2013.  An evaluation of the hydrologic relevance of lateral flow in snow at hillslope and catchment scales. Hydrological Process. 27: 640-654.

 

Elder, K., K. Dwire, R. Hubbard, C. Rhoades, S. Ryan, M. Young, L. Porth, M. Dixon and A. Goodbody, 2006, Disturbance and water related research in the western United States, Proc. of Sec. Interagency Conf., Research in the Watersheds, May 16-18, 2006, Coweeta Hydrological Lab, Otto, North Carolina.

 

Elliot, W. J.  2007.  Predicting background and risk-based sedimentation for forest watershed TMDLs.  Proc of the 10-14 March 2007 Conference on Watershed Management to Meet Water Quality Standards and TMDLs (Total Maximum Daily Loads).  St. Joseph, MI: ASABE.  109-115.

 

Elliot, W. J., P. R. Robichaud and I. S. Miller.  2007.  Erosion rates from forests and rangelands following fuel management.  Proc of the 10-14 March 2007 Conference on Watershed Management to Meet Water Quality Standards and TMDLs (Total Maximum Daily Loads).  St. Joseph, MI: ASABE.  493-499.

 

Elliot, W., Hyde, K., MacDonald, L., McKean, J., 2006. Tools for Analysis of CWE of Fuel Management. In, Elliot, W.J. and Audin, L.J., (eds.). Cumulative Watershed Effects of Fuels Management in the Western United States.

 

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F

 

Fausch, C., B. Rieman, J. Dunham, and M. Young. 2006. Strategies for conserving native salmonid populations at risk from nonnative invasions: tradeoffs in using barriers to upstream movement. USDA Forest Service, Rocky Mountain Research Station, GTR-RMRS-174, Fort Collins, CO.

 

Fausch, K.D., Rieman, B.E., Dunham, J.B., Young, M.K. and Peterson, D.P.  2009 . The invasion versus isolation dilemma: tradeoffs in managing native salmonids with barriers to upstream movement.  Conservation Biology 23(4):859-870. Published Online: February 6, 2009.  DOI: 10.1111/j.1523-1739.2008.01159.x

 

Faux, Russell N.; Buffington, John M.; Whitley, M. German; Lanigan, Steve H.; Roper, Brett B. 2009. Chapter 6.- Use of airborne near-infrared LiDAR for determining channel cross-section characteristics and monitoring aquatic habitat in Pacific Northwest rivers: A preliminary analysis In: Bayer, J.M.; Schei, J.L., eds. PNAMP special publication: Remote sensing applications for aquatic resource monitoring. Cook, WA: Pacific Northwest Aquatic Monitoring partnership. p. 43-60.

 

Ferguson, Sue A, McKay, Steven J., Nagel, David E., Piepho, Trent, Rorig, Miriam L., Anderson, Casey, Kellog, Lara, 2003.  Assessing Values of Air Quality and Visibility at Risk from Wildland Fires. Research Paper PNW-RP-550.  USDA Forest Service, Pacific Northwest Research Station, April 2003.

 

Ffolliott, Peter F.; Stropki, Cody L.; Chen, Hui; Neary, Daniel G.  2011.  The 2002 Rodeo-Chediski Wildfire's impacts on southwestern ponderosa pine ecosystems, hydrology, and fuels. Res. Pap. RMRS-RP-85. Fort Collins, CO: U.S. Department of Agriculture, Forest Service, Rocky Mountain Research Station. 36 p.

 

Foltz, R. B. 2012. A comparison of three erosion control mulches on decommissioned forest road corridors in the northern Rocky Mountains, United States. Journal of Soil and Water Conservation. 67(6):536-544.

 

Foltz, Randy B.; Copeland, Natalie S. 2009. Evaluating the efficacy of wood shreds for mitigating erosion. Journal of Environmental Management. 90: 779-785.

 

Foltz, R.B.; Copeland, N.S. 2007. Field testing of wood-based biomass erosion control materials on obliterated roads. 2007. ASABE Annual International Meeting. Paper No: 078046. Minneapolis, MN, 17-20 June 2007. July 2007.

 

Foltz, R. B.; Rhee, H.; Yanosek, K. A. 2007. Infiltration, erosion, and vegetation recovery following road obliteration. Transactions of ASABE. 50(6): 1937-1943.

 

Foltz, Randy B.; Yanosek, Kristina A.; Brown, Timothy M. 2008. Sediment concentration and turbidity changes during culvert removals. Journal of Environmental Management. 87(3): 329-340.

 

Foltz, R. B.; Copeland, N. S.; Elliot, W. J. 2009. Reopening abandoned forest roads in northern Idaho, USA: Quantification of runoff, sediment concentration, infiltration, and interrill erosion parameters. Journal of Environmental Management. 90: 2542-2550.

 

Foltz, R. B.; Wagenbrenner, N. S. 2010. An evaluation of three wood shred blends for post-fire erosion control using indoor simulated rain events on small plots. Catena. 80: 86-94.

 

Foltz, Randy B.; Westfall, Breann; Kopyscianski, Ben 2013. Turbidity changes during culvert to bridge upgrades at Carmen Creek, Idaho. Res. Note RMRS-RN-54. Fort Collins, CO: U.S. Department of Agriculture, Forest Service, Rocky Mountain Research Station. 12 p.

 

Foltz, Randy B.; Westfall, Breann; Kopyscianski, Ben. 2012. Turbidity changes during culvert to bridge upgrades at Carmen Creek, Idaho. Report to Bureau of Land Management; FFIS Agreement 2216-07-IA287. Washington, DC: U.S. Department of the Interior, Bureau of Land Management. 8 p.

 

Fornwalt, Paula J.; Rhoades, Charles C. 2011. Rehabilitating slash pile burn scars in upper montane forests of the Colorado Front Range. Natural Areas Journal. 31(2): 177-182.

 

Furniss, M.; Clifton, C.; Ronnenberg, K. eds. 2007. Advancing the Fundamental Sciences: Proceedings of the Forest Service National Earth Sciences Conference, San Diego, CA, 18-22 October 2004. Gen. Tech. Rep. PNW-GTR-689. Portland, OR: U.S. Forest Service, Pacific Northwest Research Station. 577 p.

 

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G

 

Gariglio, Frank P.; Tonina, Daniele; Luce, Charles H. 2013. Spatio-temporal variability of hyporheic exchange through a pool-riffle-pool sequence. Water Resources Research. Accepted paper. doi: 10.1002/wrcr.20419.

 

Goode, Jaime R.; Luce, Charles H.; Buffington, John M. 2012. Enhanced sediment delivery in a changing climate in semi-arid mountain basins: Implications for water resource management and aquatic habitat in the northern Rocky Mountains. Geomorphology. 139-140: 1-15.

 

Goode, Jaime R.; Buffington, John M.; Tonina, Daniele; Isaak, Daniel J.; Thurow, Russell F.; Wenger, Seth; Nagel, David; Luce, Charlie; Tetzlaff, Doerthe; Soulsby, Chris 2013. Potential effects of climate change on streambed scour and risks to salmonid survival in snow-dominated mountain basins. Hydrological Processes. 27: 750-765.

 

Goode, Jaime R.; Wohl, Ellen 2010. Substrate controls on the longitudinal profile of bedrock channels: Implications for reach-scale roughness. Journal of Geophysical Research-Earth Surface. 115: F03018. doi:10.1029/2008JF001188.

 

Gorsevski, P.V., P.E. Gessler, R.B. Foltz, and W.J. Elliot.  2006.  Spatial Prediction of Landslide Hazard Using Logistic Regression and ROC Analysis. Transactions in GIS, 10(3): 395-415.

 

Gottfried, G.J.; Neary, D.G.; Ffolliott, P.F.; Decker, D.D. 2007. Impacts of a high-intensity summer rainstorm on two small oak savanna watersheds in the southwestern borderlands. Hydrology and Water Resources in Arizona and the Southwest 36:67-73.

 

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H

 

Hill, B.H., R.K Kolka, F.H. McCormick and M.A. Starry. 2013. A synoptic survey of ecosystem services from headwater catchments in the United States.  Ecosystem Services.

 

Hill, Brian H.; McCormick, Frank H.; Harvey, Bret C.; Johnson, Sherri L.; Warren, Melvin L.; Elonen, Colleen M. 2010. Microbial enzyme activity, nutrient uptake and nutrient limitation in forested streams. Freshwater Biology. 55: 1005-1019.

 

Holsinger, L., R. Keane, D. Isaak, L. Eby, M. Young. 2014. Relative effects of climate change and wildfires on stream temperatures: a simulation modeling approach in a Rocky Mountain watershed. Climatic Change. DOI 10.1007/s10584-014-1092-5.

 

Homan, J. W., Luce, C. H., McNamara, J. P. and Glenn, N. F., 2011, Improvement of distributed snowmelt energy balance modeling with MODIS-based NDSI-derived fractional snow-covered area data. Hydrological Processes, 25: 650–660. doi: 10.1002/hyp.7857.

 

Hubbard, R. M., B. J. Bond, R. Senock and M.G. Ryan. 2002. Effects of branch height on leaf gas exchange, branch hydraulic conductance and branch sap flux in open-grown ponderosa pine. Tree Physiology 22: 575-581.

 

Hubbard, R. M., V. Stiller, M.G. Ryan and J.S. Sperry. 2001. Stomatal conductance and photosynthesis vary linearly with plant hydraulic conductance in ponderosa pine. Plant, Cell and Environment 24: 113-121.  

 

Hubbard, R.M., J.M. Vose, B.D. Clinton, K.J. Elliott, and J.D. Knoepp. 2004. Stand restoration burning in oak-pine forests in the southern Appalachians: effects on aboveground biomass and carbon and nitrogen cycling. Forest Ecology and Management 190:311-321.

 

Hubbard, R.M., M.G. Ryan, C.P. Giardina and H.R. Barnard. 2004. The effect of fertilization on sap flux and canopy conductance in a Eucalyptus saligna experimental forest. Global Change Biology 10: 427-436.

 

Hubbard, R.M., M.G. Ryan, K. Elder, and C.C. Rhoades. 2005. Seasonal patterns in soil surface CO2 flux under snow cover in 50 and 300 year old subalpine forests. Biogeochemistry 73:93-107.

 

Hubbard, Robert M.; Rhoades, Charles C.; Elder, Kelly; Negron, Jose 2013. Changes in transpiration and foliage growth in lodgepole pine trees following mountain pine beetle attack and mechanical girdling. Forest Ecology and Management. 289: 312-317.

 

Hubbart, J. A., T. E. Link, J. A Gravelle, and W. J. Elliot.  2007.  Timber harvest impacts on water yield in the continental/maritime hydroclimate region of the U.SJournal of Forestry 53(2):169-180.

 

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I

 

Ice, G.G.; Neary, D.G.; Adams, P.W. Effects of wildfire on soils and watershed processes. Journal of Forestry 102:16-20.

 

Isaak, D. J.; Wollrab, S.; Horan, D.; Chandler, G. 2011. Climate change effects on stream and river temperatures across the northwest U.S. from 1980-2009 and implications for salmonid fishes. Climatic Change. 113: 499-524.

 

Isaak, D.J. 2011. Stream Temperature Monitoring and Modeling: Recent Advances and New Tools for Managers. Stream Notes. Stream Systems Technology Center. July 2011. 7 p.

 

Isaak, Daniel J.; Thurow, Russell F. 2006. Network-scale spatial and temporal variation in Chinook salmon (Oncorhynchus tshawytscha) redd distributions: patterns inferred from spatially continuous replicate surveys. Canadian Journal of Fisheries and Aquatic Sciences. 63(2): 285-296.

 

Isaak, D.J., and D.L. Horan. 2011. An assessment of underwater epoxies for permanently installing temperature sensors in mountain streams. North American Journal of Fisheries Management 31:134-137.

 

Isaak, D.J., R.F. Thurow, B.E. Rieman, and J.B. Dunham.  2007.  Chinook salmon use of spawning patches:  relative roles of habitat quality, size, and connectivity.  Ecological Applications.  17(2):352-364.

 

Isaak, Dan; Rieman, Bruce; Horan, Dona. 2009. A watershed-scale monitoring protocol for bull trout. Gen. Tech. Rep. RMRS-GTR-224. Fort Collins, CO: U.S. Department of Agriculture, Forest Service, Rocky Mountain Research Station. 25 p.

Related website: Multiple Regression Stream Temperature Model -  with data, maps, methods and related publications

Isaak, Daniel J.; Horan, Dona L.; Wollrab, Sherry P.  2013. A simple protocol using underwater epoxy to install annual temperature monitoring sites in rivers and streams. Gen. Tech. Rep. RMRS-GTR-314. Fort Collins, CO: U.S. Department of Agriculture, Forest Service, Rocky Mountain Research Station. 21 p.

 

Isaak, Daniel J.; Luce, Charles H.; Rieman, Bruce E.; Nagel, David E.; Peterson, Erin E.; Horan, Dona L.; Parkes, Sharon; Chandler, Gwynne L. 2010. Effects of climate change and wildfire on stream temperatures and salmonid thermal habitat in a mountain river network. Ecological Applications. 20(5): 1350-1371.

Appendices

 

Related website: Spatial Statistical Stream Temperature Model -  with data, maps, methods and related presentations and publications

Isaak, Daniel J.; Muhlfeld, Clint C.; Todd, Andrew S.; Al-Chokhachy, Robert; Roberts, James; Kershner, Jeffrey L.; Fausch, Kurt D.; Hostetler, Steven W. 2012. The past as prelude to the future for understanding 21st-Century climate effects on Rocky Mountain trout. Fisheries. 37(12): 542-556.

 

Isaak, Daniel J.; Rieman, Bruce E. 2013. Stream isotherm shifts from climate change and implications for distributions of ectothermic organisms. Global Change Biology. 19: 742-751.

 

Istanbulluoglu, E., D. G. Tarboton, R. T. Pack, and C. H. Luce. 2004. Modeling of the interactions between forest vegetation, disturbances, and sediment yields.  Journal of Geophysical Research, 109, F01009, doi:10.1029/2003JF000041.

 

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K

Kauffman, J. Boone; Heider, Chris; Cole, Thomas G.; Dwire, Kathleen A.; Donato, Daniel C.  2011. Ecosystem carbon stocks of micronesian mangrove forests. Wetlands. 31: 343-352.

 

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L

 

Lentile, L.; Morgan, P.; Hardy, C.; Hudak, A.; Means, R.; Ottmar, R.; Robichaud, P.; Kennedy Sutherland, E.; Szymoniak, J.; Way, F.; Fites-Kaufman, J.; Lewis, S.; Mathews, E.; Shovik, H.; Ryan, K. 2007. Value and challenges of conducting rapid response research on wildland fires . Gen. Tech. Rep. RMRS-GTR-193. Fort Collins, CO: U.S. Department of Agriculture, Forest Service, Rocky Mountain Research Station. 11 p.

 

Lewis, S.A.; J.Q. Wu; P.R. Robichaud. 2005. Assessing burn severity and comparing soil water repellency, Hayman Fire, Colorado. Hydrological Processes 20: 1-16.

 

Lewis, S.A.; Robichaud, P.R.; Frazier, B.E.; Wu, J.Q.; Laes, D.Y.M. 2008. Using hyperspectral imagery to predict post-wildfire soil water repellency. Geomorphology 95:192-205.

 

Lewis, Sarah A.; Lentile, Leigh B.; Hudak, Andrew T.; Robichaud, Peter R.; Morgan, Penelope; Bobbitt, Michael J. 2007. Mapping ground cover using hyperspectral remote sensing after the 2003 Simi and Old wildfires in southern California. Fire Ecology. 3(1):109-128.

 

Liston, Glen E.; Elder, Kelly. 2006. A distributed snow-evolution modeling system (SnowModel). Journal of Hydrometeorology. 7(6): 1259-1276.

 

Liston, Glen E.; Elder, Kelly 2006. A meteorological distribution system for high-resolution terrestrial modeling (MicroMet). Journal of Hydrometeorology. 7(April): 217-234.

 

Luce, C. H., Tarboton, D. G. 2004. The application of depletion curves for parameterization of subgrid variability of snow. Hydrological processes. 18(8): 1409-1422

 

Luce, Charles H.; Tarboton, David G.; Istanbulluoglu, Erkan; Pack, Robert T. 2005. Reply to comment by Jonathan J. Rhodes on "Modeling of the interactions between forest vegetation, disturbances, and sediment yields". Journal of geophysical research. 110(F1): F01013 (3 p.)

 

Luce, C.H., Abatzoglou, J.T. and Holden, Z.A., 2013. The Missing Mountain Water: Slower Westerlies Decrease Orographic Enhancement in the Pacific Northwest USA. Science, 342(6164): 1360-1364.

 

Luce, Charles H.; Tonina, Daniele; Gariglio, Frank; Applebee, Ralph 2013. Solutions for the diurnally forced advection-diffusion equation to estimate bulk fluid velocity and diffusivity in streambeds from temperature time series. Water Resources Research. 49: 1-9.

 

Luce, Charles; Morgan, Penny; Dwire, Kathleen; Isaak, Daniel; Holden, Zachary; Rieman, Bruce 2012. Climate change, forests, fire, water, and fish: Building resilient landscapes, streams, and managers. Gen. Tech. Rep. RMRS-GTR-290. Fort Collins, CO: U.S. Department of Agriculture, Forest Service, Rocky Mountain Research Station. 207 p.

 

Luce, C. H.; Tarboton, D. G. 2010. Evaluation of alternative formulae for calculation of surface temperature in snowmelt models using frequency analysis of temperature observations. Hydrology and Earth System Sciences. 14: 535-543.

 

Lugo, Ariel D.; Swanson, Frederick J.; González, Olga Ramos; Adams, Mary Beth; Palik, Brian; Thill, Ronald E.; Brockway, Dale G.; Kern, Christel; Woodsmith, Richard; Musselman, Robert. 2006. Long-term research at the USDA Forest Service''s experimental forests and ranges. BioScience. 56(1): 39-48

 

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Mackey, B.H., Roering, J.J., McKean, J., Crosby, B.T., Dietrich, W.E., Submitted. Long-term landslide response to channel network dynamics: spatial analysis using airborne laser swath mapping, South Fork Eel River, California. American Geophysical Union, Geophysical Research Letters.

 

Magaña, H.A., and Villareal, T.A. 2006. The effects of environmental factors on the growth rate of Karenia brevis (Davis) G. Hansen and Moestrup. Harmful Algae, 5:192-198.

 

Magaña, H.A., Contreras, C., and Villareal, T.A. 2003. A historic assessment of Karenia brevis in the Western Gulf of Mexico. Harmful Algae, 2:163-171.

 

Maturana, Oscar; Tonina, Daniele; McKean, James A.; Buffington, John M.; Luce, Charles H.; Caamano, Diego. 2013. Modeling the effects of pulsed versus chronic sand inputs on salmonid spawning habitat in a low-gradient gravel-bed river. Earth Surface Processes and Landforms. doi: 10.1002/esp.3491

 

McDowell, N., H. Barnard, B.J. Bond, T. Hinckley, R.M. Hubbard, H. Ishii, B. Köstner, F. Magnani, J.D. Marshall, F.C. Meinzer, N. Phillips, M.G. Ryan, and D. Whitehead. 2002. The relationship between tree height and leaf area: sapwood area ratio. Oecologia 132:12-20.

 

McIntosh, B.A., J.R. Sedell, R.F. Thurow, S.E. Clarke, and G.L. Chandler. 2000. Historical changes in pool habitats in the Columbia River basin. Ecological Applications 10(5):1478-1496. 

 

McKean, Jim; Tonina, Daniele. 2013. Bed stability in unconfined gravel bed mountain streams: With implications for salmon spawning viability in future climates. Journal of Geophysical Research: Earth Surface. 118: 1227-1240.

 

McKean, Jim; Isaak, Dan; Wright, Wayne. 2009. Chapter 2: Stream and riparian habitat analysis and monitoring with a high-resolution terrestrial-aquatic LiDAR. In: Bayer, Jennifer M.; Schei, Jacquelyn L., eds. PNAMP Special Publication: Remote Sensing Applications for Aquatic Resource Monitoring. Cook, WA: Pacific Northwest Aquatic Monitoring Partnership. p. 7-16.

 

McKean, Jim; Nagel, Dave; Tonina, Daniele; Bailey, Philip; Wright, Charles Wayne; Bohn, Carolyn; Nayegandhi, Amar. 2009. Remote sensing of channels and riparian zones with a narrow-beam aquatic-terrestrial LIDAR. Remote Sensing. 1: 1065-1096.

 

McKean, J.; J. Roering. 2004. Objective landslide detection and surface morphology mapping using high-resolution airborne laser altimetry. Geomorphology, 57, 331-351.

 

McKean, J.A., D.J. Isaak, and C.W. Wright.  2008.  Geomorphic controls on salmon nesting patterns described by a new, narrow-beam terrestrial-aquatic lidar.  Frontiers in Ecology and the Environment. 6:125-130.

 

McKean, Jim; Isaak, Dan; Wright, Wayne  2009. Improving stream studies with a small-footprint green lidar.   Eos. 90(39): 341-342.

 

Meyer, Kristen E.; Dwire, Kathleen A.; Champ, Patricia A.; Ryan, Sandra E.; Riegel, Gregg M.; Burton, Timothy A.  2012. Burning questions for managers: Fuels management practices in riparian areas. Fire Management Today. 72(2): 16-23.

 

Montesi, J., K. Elder, R. A. Schmidt, and R. Davis, 2004, Sublimation of intercepted snow within a subalpine canopy at two elevations, J. Hydromet., 5, 763-773.

 

Montgomery, D.R., Schmidt, K.M., Dietrich, W.E., McKean, J. Accepted With Revisions. Instrumental record of debris flow initiation during natural rainfall. American Geophysical Union, Journal of Geophysical Research.

 

Mountjoy, J.J., McKean, J., Barnes, P.M., Pettinga, J.R., 2009. Terrestrial-style slow-moving earthflow kinematics in a submarine landslide complex. Marine Geology, v. 267, 114-127.

 

Musselman, Robert C.; Lefohn, Allen S.; Massman, William J.; Heath, Robert L. 2006. A critical review and analysis of the use of exposure- and flux-based ozone indices for predicting vegetation effects. Atmospheric Environment. 40: 1869-1888.

 

Musselman, R.C.; Korfmacher, J.L. 2007. Air quality and snow chemistry at a snowmobile staging area in a Rocky Mountain subalpine forest, Snowy Range, Wyoming. Environmental Monitoring and Assessment. 131:321-334.

 

Musselman, R. C.; Massman, W. J.; Frank, J. M.; Korfmacher, J. L. 2005. The temporal dynamics of carbon dioxide under snow in a high elevation Rocky Mountain subalpine forest and meadow. Arctic, Antarctic, and Alpine Research. 37(4): 527-538.

 

Musselman, R.C.; W.L. Slauson. 2004. Water chemistry of high elevation Colorado lakes.  Biogeochemistry 71: 387-414.

 

Musselman, Robert C.; Shepperd, Wayne D.; Smith, Frederick W.; Asherin, Lance A.; Gee, Brian W. 2012. Response of transplanted aspen to irrigation and weeding on a Colorado reclaimed surface coal mine. Res. Pap. RMRS-RP-101. Fort Collins, CO: U.S. Department of Agriculture, Forest Service, Rocky Mountain Research Station. 20 p.

 

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Nagel, D., 2005.  Estimating Valley Confinement with DEM Data to Support Cutthroat Trout Research. 2005 Resource Management Tools and Geospatial Conference, Phoenix, Arizona, April 18 – 22.

 

Nagel, D., 2007. Comparison of Two Models for Identifying Low Gradient, Unconfined Streams and Valley Bottom Extent, In Support of Stream Temperature Modeling Associated with Fire Effects. FS/BLM Geospatial 2007, Portland, OR.

 

Nagel, D., C. Luce, and B. Gutiérrez Teira, 2004.  Use of Thematic Mapper Satellite Imagery, Hemispherical Canopy Photography, and Digital Stream Lines to Predict Stream Shading in the Boise River Basin.  The 19th Annual Northwest GIS Users Conference, Sun Valley, Idaho, September 26-29, 2004.

 

Nagel, D., C. Luce, J. King, B. Rieman and J. Dunham, 2003.  Debris Flow Mapping Through Time, Data Management using ArcGIS and Implications for Fish Research. FS Geospatial ’03, Colorado Springs, CO.

 

Nagel, D., C. Luce., D. Isaak, and B. Rieman, 2007.  Toward Stream Temperature Prediction at the Drainage Basin Scale, A GIS and Remote Sensing Approach. The 22nd Annual Northwest GIS Users’ Conference and Training

 

Nagel, D., J. Buffington, and D. Isaak, 2006.  Comparison of Methods for Estimating Stream Channel Gradient Using GIS.  The 21st Annual Northwest GIS Users’ Conference and Training, Spokane, WA, September 13-15.

 

Neary, D.G. 2006. A global view of forest fires and desertification: Environmental and socio-economic consequences. Conferência Internacional sobre Incêndios e Desertificaçã, Lisbon, Portugal, 30 October 2006, Comissão Nacional de Coordenação do PANCD (Programa de Acção Nacional de Combate à Desertificação), General Directorat of Forestry Resources, Portugal. Programa de Acção Nacional de Combate à Desertificação Proceedings. 4 p

 

Neary, D.G.; Gottfried, G.J. Beyers, J.L.; Ffolliott, P.F. 2006. Floods and sediment yields from recent wildfires in Arizona. Proceedings of the 8th Federal Interagency Sediment Conference, Las Vegas, NV April 3-6, 2006. CD-ROM

 

Neary, D.G.; Gottfried, G.J.; Ffolliott, P.F. 2006. Effects of prescribed fire on oak savannas in the American Southwest. In: Viegas, D.X. (ed.) Proceedings of the 5th International Conference on Forest Fire Research. CD ROM, Elsevier, Amsterdam, The Netherlands. 13 p.

 

Neary, D.G.; Overby, S.T. 2006. Wildfire and post-fire erosion impacts on forest ecosystem carbon and nitrogen: an analysis. In: Viegas, D.X. (ed.) Proceedings of the 5th International Conference on Forest Fire Research. CD ROM, Elsevier, Amsterdam, The Netherlands. 12 p.

 

Neary, Daniel G.; Ryan, Kevin C.; DeBano, Leonard F., eds. 2005. (revised 2008). Wildland fire in ecosystems: effects of fire on soils and water. Gen. Tech. Rep. RMRS-GTR-42-vol.4. Ogden, UT: U.S. Department of Agriculture, Forest Service, Rocky Mountain Research Station. 250 p.

 

Neary, Daniel G.; Medina, Alvin L.; Rinne, John N.  2012. Synthesis of Upper Verde River research and monitoring 1993-2008. Gen. Tech. Rep. RMRS-GTR-291. Fort Collins, CO: U.S. Department of Agriculture, Forest Service, Rocky Mountain Research Station. 296 p.

 

Nelson, Monique LaPerriere; Rhoades, Charles C.; Dwire, Kathleen A. 2011. Influence of bedrock geology on water chemistry of slope wetlands and headwater streams in the southern Rocky Mountains. Wetlands. 31: 251-261.

 

Neville, H. M.; Isaak, D. J.; Dunham, J. B.; Thurow, R. F.; Rieman, B. E. 2006. Fine-scale natal homing and localized movement as shaped by sex and spawning habitat in Chinook salmon: Insights from spatial autocorrelation analysis of individual genotypes. Molecular Ecology. 15: 4589-4602.

 

Neville, H., Isaak, D., Thurow, R., Dunham, J., Rieman, B.  2006.  Microsatellite variation reveals weak genetic structure and retention of genetic variability in threatened Chinook salmon (Onchorynchus tshawytscha) within a Snake River watershed.  Conservation Genetics.  DOI 10.1007/s10592-006-9155-4. 

 

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Overton, C. Kerry; Wollrab, Sherry P.; Roberts, Bruce C.; Radko, Michael A. 1997. R1/R4 (Northern/Intermountain Regions) fish and fish habitat standard inventory procedures handbook. Gen. Tech. Rep. INT-GTR-346. Ogden, UT: U.S. Department of Agriculture, Forest Service, Intermountain Research Station. 73 p.

 

Overton, C. Kerry; Chandler, Gwynne L.; Pisano, Janice A. 1994. Northern/Intermountain Regions' fish habitat inventory: grazed, rested, and ungrazed reference stream reaches, Silver King Creek, California. Gen. Tech. Rep. INT-GTR-311. Ogden, UT: U.S. Department of Agriculture, Forest Service, Intermountain Research Station. 27 p.

 

Overton, C. Kerry; McIntyre, John D.; Armstrong, Robyn; Whitwell, Shari L.; Duncan, Kelly A. 1995. User''s guide to fish habitat: descriptions that represent natural conditions in the Salmon River Basin, Idaho. Gen. Tech. Rep. INT-GTR-322. Ogden, UT: U.S. Department of Agriculture, Forest Service, Intermountain Research Station. 142 p.

 

Overton, C. Kerry; Radko, Michael A.; Nelson, Rodger L. 1993. Fish habitat conditions: using the Northern/Intermountain Regions'' inventory procedures for detecting differences on two differently managed watersheds. Gen. Tech. Rep. INT-300. Ogden, UT: U.S. Department of Agriculture, Forest Service, Intermountain Research Station. 14 p.

 

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Perron, T., Dietrich, W., Howard, A., McKean, J., Pettinga, J. 2003. Ice-driven creep on Martian debris slopes. Geophysical Research Letters, 30(14), 1747, doi:10.1029/2003GL017603.

 

Peterson, Douglas P.; Rieman, Bruce E.; Dunham, Jason B.; Fausch, Kurt D.; Young, Michael K. 2007. Analyzing tradeoffs between the threat of invasion by brook trout and effects of intentional isolation for native westslope cutthroat trout. In: Carline, R.F.; LoSapio, C., eds. 2007. Sustaining wild trout in a changing world; proceedings of Wild Trout IX symposium; 2007 October 9-12; West Yellowstone, Montana: 51-57.

 

Peterson, Douglas P.; Wenger, Seth J.; Rieman, Bruce E.; Isaak, Daniel J.  2013. Linking climate change and fish conservation efforts using spatially explicit decision support tools. Fisheries. 38(3): 112-127 + 58 pages of appendices.

 

Peterson, Erin E.; Ver Hoef, Jay M.; Isaak, Dan J.; Falke, Jeffrey A.; Fortin, Marie-Josee; Jordan, Chris E.; McNyset, Kristina; Monestiez, Pascal; Ruesch, Aaron S.; Sengupta, Aritra; Som, Nicholas; Steel, E. Ashley; Theobald, David M.; Torgersen, Christian E.; Wenger, Seth J. 2013. Modelling dendritic ecological networks in space: An integrated network perspective. Ecology Letters. doi: 10.1111/efe.12084.

 

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Rader, Russel B.; Belish, Timberley; Young, Michael K.; Rothlisberger, John 2007. The scotopic visual sensitivity of four species of trout: A comparative study. Western North American Naturalist. 67(4): 524-537.

 

Reese, H., Lillesand, T., Nagel, D., Stewart, J., Goldmann, R., Simmons, T., Chipman, J., and Tessar, P., 2002. Statewide Land Cover Derived from Multi-seasonal Landsat TM Data: A Retrospective of the WISCLAND Project. Remote Sensing of Environment.  82(2-3):224-237.

 

Reeves, G.H., P.A. Bisson, B.E. Rieman, L.E. Benda. 2006. Postfire Logging in Riparian Areas. Conservation Biology. 20(4):994-1004.

 

Rhoades, C. C.; Battaglia, M. A.; Rocca, M. E.; Ryan, M. G. 2012. Short- and medium-term effects of fuel reduction mulch treatments on soil nitrogen availability in Colorado conifer forests. Forest Ecology and Management. 276: 231-238.

 

Rhoades, C.C. 2007. Influence of American chestnut (Castanea dentata) on chemistry and nitrogen availability of fine and coarse-texture soils. Pedobiologia. 50:553-562.

 

Rhoades, Charles C.; Meier, A. J.; Rebertus, A. J. 2004. Soil properties in fire-consumed log burnout openings in a Missouri oak savanna. Forest ecology and management. 192(2/3): 277-284.

 

Rhoades, Charles; Binkley, Dan; Oskarsson, Hlynur; Stottlemyer, Robert. 2008. Soil nitrogen accretion along a floodplain terrace chronosequence in northwest Alaska: Influence of the nitrogen-fixing shrub Shepherdia Canadensis. Ecoscience. 15(2): 223-230.

 

Rhoades, Charles C.; Entwistle, Deborah; Butler, Dana. 2011. The influence of wildfire extent and severity on streamwater chemistry, sediment and temperature following the Hayman Fire, Colorado. International Journal of Wildfire Science. 20: 430-442.

 

Rieman, Bruce E.; Hessburg, Paul F.; Luce, Charles; Dare, Matthew R.  2010.  Wildfire and management of forests and native fishes: Conflict or opportunity for convergent solutions?. BioScience. 60(6): 460-468.

 

Rieman, Bruce E.; Isaak, Daniel J. 2010. Climate change, aquatic ecosystems, and fishes in the Rocky Mountain West: implications and alternatives for management. Gen. Tech. Rep. RMRS-GTR-250. Fort Collins, CO: U.S. Department of Agriculture, Forest Service, Rocky Mountain Research Station. 46 p.

 

Rieman, Bruce E.; Isaak, Daniel; Adams, Susan; Horan, Dona; Nagel, David; Luce, Charles; Myers, Deborah 2007. Anticipated climate warming effects on bull trout habitats and populations across the interior Columbia River basin. Transactions of the American Fisheries Society. 136: 1552-1565.

 

Rieman, B.E. and G.L. Chandler. 1999. Empirical evaluation of temperature effects on bull trout distribution in the northwest. Final Report to: U.S. EPA, Contract 12957242-01-0, Boise, Idaho.

 

Rieman, B.E., D.C. Lee, G. Chandler, and D. Myers. 1997. Does wildfire threaten extinction for salmonids: responses of redband trout and bull trout following recent large fires on the Boise National Forest. Pages 47-57 In, J. Greenlee (editor). Proceedings of the Conference on Wildfire and Threatened and Endangered Species and Habitats, November 13-15, 1995, Coeur d'Alene Idaho. International Association of Wildland Fire, Fairfield, Washington.

 

Rieman, Bruce E.; Dunham, Jason B.; Clayton, James L. 2006. Emerging concepts for management of river ecosystems and challenges to applied integration of physical and biological sciences in the Pacific Northwest, USA. International journal of river basin management. 4(2): 85–97

 

Rieman, Bruce E.; Peterson, James T.; Myers, Deborah L. 2006. Have brook trout (Salvelinus fontinalis) displaced bull trout (Salvelinus confluentus) along longitudinal gradients in central Idaho streams?. Canadian Journal of Fisheries and Aquatic Sciences. 63(1): 63-78.

 

Rinne J. N and G. Jacoby.  2005. Aquatic Biota, Fishes. Invertebrates.   Pp 135-143.  In:  Neary D. G., Ryan, K.;  Landsberg, J.; Debano, L. F. (technical editors). Wildland Fire in Ecosystems:  Effects of on soil and water.  USDA Forest Service General Technical Report RM-42, Fort Collins CO.

 

Rinne, J. N. and B. Calamusso.   2006.  Southwestern trouts.  Conservation with reference to physiography, hydrology, distribution and threats. American Fisheries Society Symposium 53:  63- 77.  Bethesda, MD.

 

Rinne, J. N. and D. Miller. 2006. Hydrology, geomorphology and management: Implications for sustainability of southwestern native fishes. Reviews in Fisheries Biology.

 

Rinne, J. N.  2005.  Changes in Fish assemblages in the Verde River, Arizona, pp 115-126. In, Rinne, J. N.; Hughes, R. M.; Calamusso, B. (editors)  . Historical changes in fish assemblages of large rivers in the Americas.  American Fisheries Society Symposium 45.   Bethesda, MD   611 pp.

 

Rinne, J. N., R. M. Hughes, and B. Calamusso. (editors).  2005.  Historical changes in fish assemblages of large rivers in the Americas. American Fisheries Society Symposium 45.     American Fisheries Society,  Bethesda, MD.  611 pp.

 

Robichaud, P. R., W. J. Elliot, F. B. Pierson, D. E. Hall, C. A. Moffet and L. E. Ashmun.  2007.  Erosion Risk Management Tool (ERMiT) user manual (version 2006.01.18). Gen. Tech. Rep. RMRS-GTR-188.  Fort Collins, CO: U.S. Department of Agriculture, Forest Service, Rocky Mountain Research Station.  24 p.

 

Robichaud, P.R.; J.L. Beyers; D.G. Neary. 2005. Chapter 10: Watershed rehabilitation. In: Neary, D.G.; K.C. Ryan; L.F. DeBano, eds. Wildland fire in ecosystems: effects of fire on soils and water. Gen Tech Rep RMRS-GTR-42-vol.4. Ogden, UT: USDA Forest Service, Rocky Mountain Research Station. 179-197.

 

Robichaud, P.R.; Lewis, S.A.; Ashmun, L.E. 2008. New procedure for sampling infiltration to assess post-fire soil water repellency. Res. Note. RMRS-RN-33. Fort Collins, CO: U.S. Department of Agriculture, Forest Service, Rocky Mountain Research Station. 14 p.

 

Robichaud, Peter R.; Lewis, Sarah A.; Laes, Denise Y. M.; Hudak, Andrew T.; Kokaly, Raymond F.; Zamudio, Joseph A. 2007. Postfire soil burn severity mapping with hyperspectral image unmixing. Remote Sensing of the Environment. 108: 467-480.

 

Robichaud, Peter R.; Pierson, Frederick B.; Brown, Robert E.; Wagenbrenner, Joseph W. 2008. Measuring effectiveness of three postfire hillslope erosion barrier treatments, western Montana, USA. Hydrological Processes. 22: 159-170.

 

Robichaud, P.R.; T.R. Lillybridge; J.W. Wagenbrenner. 2006. Effects of postfire seeding and fertilization on hillslope erosion in north-central Washington, USA. Catena 67: 56-67.

 

Robichaud, Peter R.; Elliot, William J. 2006. Protection from erosion following wildfire. Unpublished paper written for presentation at the 2006 ASABE Annual International Meeting, Portland Convention Center, Portland, OR, July 9-12, 2006. ASABE Paper No. 068009. St. Joseph, MI: American Society of Agricultural and Biological Engineers. 7 p

 

Robichaud, P. R.; Wagenbrenner, J. W.; Brown, R. E.; Wohlgemuth, P. M.; Beyers, J. L. 2008. Evaluating the effectiveness of contour-felled log erosion barriers as a post-fire runoff and erosion mitigation treatment in the western United States. International Journal of Wildland Fire. 17: 255-273.

 

Robichaud, Peter R.; Ashmun, Louise E.; Foltz, Randy B.; Showers, Charles G.; Groenier, J. Scott; Kesler, Jennifer; DeLeo, Claire; Moore, Mary 2013. Production and aerial application of wood shreds as a post-fire hillslope erosion mitigation treatment. Gen. Tech. Rep. RMRS-GTR-307. Fort Collins, CO: U.S. Department of Agriculture, Forest Service, Rocky Mountain Research Station. 31 p.

 

Robichaud, Peter R.; Lewis, Sarah A.; Wagenbrenner, Joseph W.; Ashmun, Louise E.; Brown, Robert E.  2013.  Post-fire mulching for runoff and erosion mitigation; Part I: Effectiveness at reducing hillslope erosion rates. Catena. 105: 75-92.

 

Robichaud, Peter R.; Wagenbrenner, Joseph W.; Lewis, Sarah A.; Ashmun, Louise E.; Brown, Robert E.; Wohlgemuth, Peter M. 2013. Post-fire mulching for runoff and erosion mitigation; Part II: Effectiveness in reducing runoff and sediment yields from small catchments. Catena. 105: 93-111.

 

Roering, J.J.; Almond, P.; Tonkin, P.; McKean, J. 2004. Constraining climatic controls on hillslope dynamics using a coupled model for the transport of soil and tracers: Application to loess-mantled hillslopes, Charwell River, South Island, New Zealand. Journal of Geophysical Research-Earth Surface, v. 109, F01010, doi:10.1029/2003JF000034.

 

Roering, J., Almond, P., Tonkin, P., McKean, J., 2002. Soil transport driven by biological processes over millennial time scales. Geology, 30(12), 1115-1118.

 

Roper, Brett B.; Buffington, John M.; Bennett, Stephen; Lanigan, Steven H.; Archer, Eric; Downie, Scott T.; Faustini, John; Hillman, Tracy W.; Hubler, Shannon; Jones, Kim; Jordan, Chris; Kaufmann, Philip R.; Merritt, Glenn; Moyer, Chris; Pleus, Allen. 2010. A comparison of the performance and compatibility of protocols used by seven monitoring groups to measure stream habitat in the Pacific Northwest. North American Journal of Fisheries Management 30: 565-587.

 

Rosenberger, A. E., J. B. Dunham, J. M. Buffington, and M. S. Wipfli. 2011. Persistent effects of wildfire and debris flows on the invertebrate prey base of rainbow trout in Idaho streams. Northwest Science 85(1):55-63.

 

Ryan, Sandra E.; Dixon, Mark K. 2007. Spatial and temporal variability in stream sediment loads using examples from the Gros Ventre Range, Wyoming, USA. In: Habersack, H.; Piegay, H.; Rinaldi, M., editors. Gravel bed rivers VI: From process understanding to river restoration. Developments in Earth Surface Processes. 11: 387-407.

 

Ryan, Sandra E.; Emmett, William W. 2002. The nature of flow and sediment movement in Little Granite Creek near Bondurant, Wyoming. Gen. Tech. Rep. RMRS-GTR-90. Ogden, UT: U.S. Department of Agriculture, Forest Service, Rocky Mountain Research Station. 48 p.

 

Ryan, S.E.; K. Bunte; and J.P. Potyondy. 2005.  Breakout Session 2:  Bedload Transport Measurement, Data Uncertainty, and New Technologies.  Proceedings of the Federal Interagency Sediment Monitoring Instrument and Analysis Research Workshop, September 9-11, 2003, Flagstaff, AZ.  USGS Circular 1276.  pp. 16-28.

 

Ryan, S.E.; L.S. Porth; and C.A. Troendle. 2005.  Coarse sediment transport in mountain streams in Colorado and Wyoming, USA.  Earth Surface Processes and Landforms 30:269-288.

 

Ryan, Sandra E.; Porth, Laurie S.; Troendle, C. A. 2002. Defining phases of bedload transport using piecewise regression. Earth Surface Processes and Landforms. 27: 971-990.

 

Ryan, S.E.; M.K. Dixon; and K.A. Dwire.  2006. The use of turbidity sensors for monitoring sediment loads following wildfire.  Proceedings of the 8th Interagency Sedimentation and 3rd Interagency Hydrologic Modeling Conference, Reno, NV, April 2-6, 2006. Available on CD.

 

Ryan, Sandra E.; Dwire, Kathleen A.; Dixon, Mark K.  2011. Impacts of wildfire on runoff and sediment loads at Little Granite Creek, western Wyoming. Geomorphology. 129: 113-130.

 

Ryan, Sandra; Dwire, Kathleen  2012.  Wildfire impacts on stream sedimentation: re-visiting the Boulder Creek Burn in Little Granite Creek, Wyoming, USA.   In: Stone, Mike; Collins, Adrian; Thoms, Martin, eds. Wildfire and Water Quality: Processes, Impacts and Challenges (Proceedings of a conference held in Banff, Canada, 11­14 June 2012). IAHS Publ. 354. International Association of Hydrological Sciences. p. 75-80.

 

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Spigel, K.M.; Robichaud, P.R. 2007. First-year post-fire erosion rates in Bitterroot National Forest, Montana. Hydrolpgical Processes 21(8): 998-1005.

 

Stone, Katharine R.; Pilliod, David S.; Dwire, Kathleen A.; Rhoades, Charles C.; Wollrab, Sherry P.; Young, Michael K.  2010.  Fuel reduction management practices in riparian areas of the western USA. Environmental Management. 46: 91-100.

 

Switalski, T. A.; Bissonette, J. A.; Deluca, T. H.; Luce, C. H.; Madej, M. A. 2004. Benefits and impacts of road removal. Frontiers in ecology and the environment. 2(1): 21-28.

 

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Thurow, Russell F.; Peterson, James T.; Guzevich, John W. 2006. Utility and validation of day and night snorkel counts for estimating bull trout abundance in first-to-third order streams. North American Journal of Fisheries Management. 26: 117-132.

 

Tonina, Daniele; Buffington, John M. 2009. A three-dimensional model for analyzing the effects of salmon redds on hyporheic exchange and egg pocket habitat. Canadian Journal of Fisheries and Aquatic Sciences. 66(12): 2157-2173.

 

Tonina, Daniele; Buffington, John M. 2011. Effects of stream discharge, alluvial depth and bar amplitude on hyporheic flow in pool-riffle channels. Water Resources Research. 47: W08508. doi:10.1029/2010WR009140.

 

Tonina, Daniele; Buffington, John M. 2007. Hyporheic exchange in gravel bed rivers with pool-riffle morphology: Laboratory experiments and three-dimensional modeling. Water Resources Research, 43: W01421, doi:10.1029/2005WR004328.

 

Tonina, D.; McKean, J. A.; Tang, C.; Goodwin, P. 2011. New tools for aquatic habitat modeling. In: Valentine, Eric M., ed. Balance and uncertainty - Water in a changing world: Proceedings of the 34th IAHR World Congress, 33rd Hydrology and Water Resources Symposium, and 10th Conference on Hydraulics in Water Engineering; 26 June-1 July 2011, Brisbane, Australia. Engineers Australia. p. 3137-3144.

 

Tonina, Daniele; Buffington, John M. 2009. Hyporheic exchange in mountain rivers I: Mechanics and environmental effects. Geography Compass. 3(3): 1063-1086.

 

Tonina, Daniele; McKean, James A. 2010. Climate change impact on salmonid spawning in low-gradient streams in central Idaho, USA. In: Tao, J.; Chen, Q.; Liong, S-Y, eds. Proceedings of 9th International Conference on Hydroinformatics 2010; 7-11 September 2010; Tianjin, China. Beijing: Chemistry Industry Press. p. 389-397.

 

Trammell, T.L.E., C.C. Rhoades, and P.A. Bukaveckas. 2004. Effects of prescribed burns on nitrogen, phosphorus, and base-cation loss from forest-glade habitats in central Kentucky. Restoration Ecology 12:596-603.

 

Trujillo, Ernesto; Ramirez, Jorge A.; Elder, Kelly J. 2007. Topographic, meteorologic, and canopy controls on the scaling characteristics of the spatial distribution of snow depth fields. Water Resources Research. 43, W07409, doi:10.1029/2006WR005317.

 

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U.S. Fish and Wildlife Service (USFWS). 2008. Bull Trout Recovery: Monitoring and Evaluation Guidance. Report prepared for the U.S. Fish and Wildlife Service by the Bull Trout Recovery and Monitoring Technical Group (RMEG). Portland, Oregon. Version 1 - 74 pp.

 

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V

 

Villareal, T.A. and Magaña, H.A. 2001. A red tide monitoring program for Texas coastal waters. Final Report Texas Parks and Wildlife pp. 77.

 

Vose, James M.; Ford, Chelcy R.; Laseter, Stephanie; Dymond, Salli; Sun, Ge; Adams, Mary Beth; Sebestyen, Stephen; Campbell, John; Luce, Charlie; Amatya, Devendra; Elder, Kelly; Heartsill, Tamara. 2012. Can forest watershed management mitigate climate change effects on water resources. In: Webb, Ashley A.; Bonell, Mike; Bren, Leon; Lane, Patrick N. J.; et. al., eds. 2012. Revisiting Experimental Catchment Studies in Forest Hydrology, Proceedings of a Workshop held during the XXV IUGG General Assembly in Melbourne, June–July 2011. IAHS Publ. 353:Oxfordshire, UK. 12-25.

 

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Wenger, Seth J.; Isaak, Daniel J.; Dunham, Jason B.; Fausch, Kurt D.; Luce, Charlie; Neville, Helen M.; Rieman, Bruce E.; Young, Michael K.; Nagel, David E.; Horan, Dona L.; Chandler, Gwynne L.  2011.  Role of climate and invasive species in structuring trout distributions in the interior Columbia River Basin, USA.   Canadian Journal of Fisheries and Aquatic Science. 68: 988-1008.

 

Wenger, Seth J.; Isaak, Daniel J.; Luce, Charlie; Neville, Helen M.; Fausch, Kurt D.; Dunham, Jason B.; Dauwalter, Daniel C.; Young, Michael K.; Elsner, Marketa M.; Rieman, Bruce E.; Hamlet, Alan F.; Williams, Jack E.  2011.  Flow regime, temperture, and biotic interactions drive differential declines of trout species under climate change. Proceedings of the National Academy of Science (PNAS). 108(34): 14175-14180.

 

Wenger, Seth J.; Luce, Charles H.; Hamlet, Alan F.; Isaak, Daniel J.; Neville, Helen M. 2010. Macroscale hydrologic modeling of ecologically relevant flow metrics. Water Resources Research. 46: W09513. doi:10.1029/2009WR008839.

 

Wenger, Seth J.; Som, Nicholas A.; Dauwalter, Daniel C.; Isaak, Daniel J.; Neville, Helen M.; Luce, Charles H.; Dunham, Jason B.; Young, Michael K.; Fausch, Kurt D.; Rieman, Bruce E. 2013. Probabilistic accounting of uncertainty in forecasts of species distributions under climate change. Global Change Biology. Accepted paper. doi: 10.1111/gcb.12294.

 

Whiteley, A.; Spruell, P.; Rieman, B.; Allendorf, F. 2006. Fine-scale genetic structure of bull trout at the southern limit of their distribution. Transactions of the American Fisheries Society 135: 1238-1253.

 

Wilcox, Taylor M.; McKelvey, Kevin S.; Young, Michael K.; Jane, Stephen F.; Lowe, Winsor H.; Whiteley, Andrew R.; Schwartz, Michael K. 2013. Robust detection of rare species using environmental DNA: The importance of primer specificity. PLoS ONE 8(3): e59520. doi: 10.1371/journal.pone.0059520

 

Wohl, Ellen; Bolton, Susan; Cadol, Daniel; Comiti, Francesco; Goode, Jaime R.; Mao, Luca 2012. A two end-member model of wood dynamics in headwater neotropical rivers. Journal of Hydrology. 462-463: 67-76.

 

Wohl, Ellen; Dwire, Kathleen; Sutfin, Nicholas; Polvi, Lina; Bazan, Roberto 2012. Mechanisms of carbon storage in mountainous headwater rivers. Nature Communications. 3: 1263.

 

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Young, Michael K.; Mace, Ethan A.; Ziegler, Eric T.; Sutherland, Elaine K. 2006. Characterizing and contrasting instream and riparian coarse wood in western Montana basins. Forest Ecology and Management. 226: 26-40.

 

Young, M. K., G. T. Allison, and K. Foster.  2007.  Observations of boreal toads (Bufo boreas boreas) and Batrachochytrium dendrobatidis in south-central Wyoming and north-central Colorado.  Herpetological Review 38:  146-150.

 

Young, Michael K.; Guenther-Gloss, Paula M.; Ficke, Ashley D. 2005. Predicting cutthroat trout (Oncorhynchus clarkii) abundance in high-elevation streams: revisiting a model of translocation success. Canadian Journal of Fisheries and Aquatic Sciences, Volume 62, Number 10, 1 October 2005, pp. 2399-2408(10).

 

Young, Michael K.; Schmetterling, David A. 2009. Age-related seasonal variation in captures of stream-borne Boreal Toads (Bufo boreas boreas, Bufonidae) in western Montana. Copeia. 1: 117-124.

 

Young, Michael K.; McKelvey, Kevin S.; Pilgrim, Kristine L.; Schwartz, Michael K. 2013. DNA barcoding at riverscape scales: Assessing biodiversity among fishes of the genus Cottus (Teleostei) in northern Rocky Mountain streams. Molecular Ecology. doi: 10.1111/1755-0998.12091.

 

Young, Michael K.; Schmetterling, David A. 2012. Movement and capture efficiency of radio-tagged salmonids sampled by electrofishing. North American Journal of Fisheries Management. 32: 823-831.

 

 

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