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Aquatic Ecology: awae research subject areas
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The interdisciplinary scientific study of the distribution and abundance of organisms and their interactions with their environment (external abiotic and biotic factors) is known as ecology. The most prevalent research topics within AWAE include: Bark Beetle research, invasive species, conservation, restoration ecology, fire ecology, riparian environments and more. |
featured Science
| Fisheries |

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Bull Trout and Climate Change - Risks, Uncertainties and Opportunities for Mapping the Future
Bull trout are a federally listed, native charr species distributed throughout the Pacific Northwest. Among the critical requirements for this species are a need for large, interconnected habitats of cold water. Much uncertainty exists regarding the future of bull trout and their habitats given environmental trends associated with a warming climate and increasing fire activity. Presentations at this symposium provide an overview of bull trout, their relationship to climate, and alternatives for modeling future habitat and population distributions.
Videos and Abstracts of the 2008 Western Division Meeting of the American Fisheries Society |
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Nonnative Fish Removal
Nonnative brook trout have invaded and replaced native cutthroat trout in many Rocky Mountain streams. Methods to remove brook trout, such as chemical treatment and intensive electrofishing, are expensive, time-consuming, and sometimes controversial. An alternative technique used in control of unwanted insects, pheromone lures and traps, may be applicable to fish.
Briefing Paper |
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Monitoring Bull Trout Populations
Bull trout are native to much of the Pacific Northwest, but population declines during the 20th century prompted listing under the Endangered Species Act. Several national forests have also selected bull trout as a Management Indicator Species, which makes monitoring a priority. Monitoring protocols have traditionally focused on tracking site level abundance, but these approaches can be costly to apply across broad areas and are being replaced in some instances by distributional monitoring. Researchers at the Boise Aquatic Sciences Lab have adapted distributional approaches for bull trout to create a monitoring protocol that can be applied rapidly and inexpensively while providing powerful trend detection across broader areas relevant to land management.
Briefing Paper | A Watershed-scale Monitoring Protocol for Bull Trout (RMRS-GTR-224) |
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| Other Aquatic Vertebrates & Invertebrates |

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Detecting Mobile Boreal Toads
Boreal Toad populations are declining and are difficult to observe. Factors such as understanding their ecology and developing monitoring tools are critical.
Briefing Paper |
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| Invasive Species |

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Invasive Species: Managing for Native Trout
Invasive Species are one of the most important threats to the integrity of stream ecosystems. Although widely distributed, invasions and the disruption of native communities are not universal. Understanding where invasion risks are most important and what can be done about it will be key to prioritization of limited management resources.
Briefing Paper |
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Nonnative Fish Removal (SEE FISHERIES)
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| Stream Temperature |

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Stream Temperature Modeling
Stream thermal regimes are important within regulatory contexts and strongly affect aquatic ecosystems. Numerous approaches have been developed for modeling stream temperatures, but broad application of these models to USFS lands has been constrained by data limitations and poor predictive ability. RMRS scientists have developed an approach to modeling stream temperatures that requires a minimum of field effort by using existing temperature records in combination with GIS and remote sensing technologies. The approach is being applied in a central Idaho watershed to map thermal habitat networks for native fish species, but could also be used to forecast future habitat distributions, improve understanding of factors affecting stream temperatures, determine compliance with water quality standards, or optimize temperature sampling strategies.
Briefing Paper | Stream Temperature Modeling and Monitoring Website |
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River Bathymetry Toolkit (RBT)
Traditional techniques for describing and understanding aquatic physical habitat in streams have focused on manual measurements of channel topography. New remote sensing techniques, such as airborne water-penetrating Light Detection and Ranging (LiDAR) and boat-mounted acoustic sensors can produce highly accurate Digital Elevation Models (DEMs) with continuous coverage of long segments of channels and stream networks. The US Forest Service and ESSA Technologies have developed a suite of GIS tools, the River Bathymetry Toolkit (RBT), for processing high resolution DEMs of channels. Our goal is to characterize in-stream and floodplain geomorphology to support aquatic habitat analyses and numerical models of flow and sediment transport. The (RBT) is available for free and is under active development.
River Bathymetry Toolkit (RBT) | Briefing Paper
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