Pacific Northwest Research Station

Beaulieu, J.J.; Tank, J.L.; Hamilton, S.K. [et al.]. 2011.

Nitrous oxide emission from denitrification in stream and river networks.

Proceedings of the National Academy of Sciences of the United States of America. 108(1): 214-219.

Binckley, C.A.; Wipfli, M.S.; Medhurst, R.B.; Polivka, K. [et al.]. 2010.
Ecoregion and land-use influence invertebrate and detritus transport from headwater streams.
Freshwater Biology. 55: 1205-1218.

Janisch, J.E.; Foster, A.D.; Ehinger, W.J. 2011.
Characteristics of small headwater wetlands in second-growth forests of Washington, U.S.A.
Forest Ecology and Management. 261: 1265-1274.

Zarnetske, J.P.; Haggerty, R.; Wondzell, S.M.; Baker, M.A. 2011.
Dynamics of nitrate production and removal as a function of residence time in the hyporheic zone.
Journal of Geophysical Research. 116: G01025. 1-12.

 

Temesgen, H.; Monleon, V.; Weiskittel, A.; Wilson, D. 2011.
Sampling strategies for efficient estimation of tree foliage biomass.
Forest Science. 57(2): 153-163.

 

Molina, R.; Horton, T.R.; Trappe, J.M.; Marcot, B.G. 2011.
Addressing uncertainty: how to conserve and manage rare or little-known fungi.
Fungal Ecology. 4: 134-146.

 

Chmura, D.J.; Howe, G.T.; Anderson, P.D.; St. Clair, J.B. 2010.
Adaption of trees, forests and forestry to climate change.
SYLWAN. 154(9): 587-602.

Choi, S.-W.; Sohngen, B.; Alig, R. 2011.
An assessment of the influence of bioenergy and marketed land amenity values on land uses in the midwestern US.
Ecological Economics. 70: 713-720.

Donovan, G.H.; Michael, Y.L.; Butry, D.T. [et al.]. 2011.
Urban trees and the risk of poor birth outcomes.

Health & Place. 17: 390-393.

Currie, W.S.; Harmon, M.E.; Burke, I.C. [et al.]. 2009.
Cross-biome transplants of plant litter show decomposition models extend to a broader climatic range but lose predictability at the decadal time scale.

Global Change Biology. 16: 1744-1761.

Helton, A.M.; Poole, G.C.; Meyer, J.L. [et al.]. 2011.
Thinking outside the channel: modeling nitrogen cycling in networked river ecosystems.

Frontiers in Ecology and the Environment. 9(4): 229-238.

 

Nossov, D.R.; Ruess, R.W.; Hollingsworth, T.N. 2010.
Climate sensitivity of thinleaf alder growth on an interior Alaska floodplain.
Ecoscience. 17(3): 312-320.

Nossov, D.R.; Hollingsworth, T.N.; Ruess, R.W.; Kielland, K. 2011.
Development of Alnus tenuifolia stands on an Alaskan floodplain: patterns of recruitment, disease, and succession.

Journal of Ecology. 99: 621-633.

Phillips, C.L.; Nickerson, N.; Risk, D. [et al.]. 2010.
Soil moisture effects on the carbon isotope composition of soil respiration.
Rapid Communications in Mass Spectrometry. 24(9): 1271-1280.

Ager, A.A.; Finney, M.A.; McMahan, A.; Carthcart, J. 2010.
Measuring the effect of fuel treatments on forest carbon using landscape risk analysis.
Natural Hazards and Earth System Sciences. 10: 1-12.

Ager, A.; Vaillant, N., Finney, M.  2010.
A comparison of landscape fuel treatment strategies to mitigate wildland fire risk in the urban interface and preserve old forest structure.
Forest Ecology and Management. 259: 1556-1570.

Bernhardt, E.L.; Hollingsworth, T.N.; Chapin, F.S., III. 2011.
Fire severity mediates climate-driven shifts in understorey community composition of black spruce stands of interior Alaska.

Journal of Vegetation Science. 22: 32-44.

French, N.H.F.; de Groot, W.J.; Jenkins, L.K. [et al.]. 2011.
Model comparisons for estimating carbon emissions from North American wildland fire.

Journal of Geophysical Research.116: G00K05. 21 p.

 

Halofsky, J.E.; Peterson, D.L; Furniss, M.J. [et al.]. 2011.
Workshop approach for developing climate change adaptation strategies and actions for natural resource management agencies in the United States.

Journal of Forestry. 109(4): 219-225.

Johnson, M.C.; Kennedy, M.C; Peterson, D.L. 2011.
Simulating fuel treatment effects in dry forests of the western United States: testing the principles of a fire-safe forest.

Canadian Journal of Forest Research. 41(6): 1018-1030.

Peterson, D.L. 2010.
Managing fire and fuels in a warmer climate.

Northwest Woodlands. 26(2): 16-17/28-29.

Reiner, A.L.; Vaillant, N.M.; Fites-Kaufman, J.; Dailey, S.N. 2009.
Mastication and prescribed fire impacts on fuels in a 25-year old ponderosa pine plantation, southern Sierra Nevada.

Forest Ecology and Management. 258: 2365-2372.

 

Turetsky, M.R.; Kane, E.S.; Harden, J.W. [et al.]. 2010.
Recent acceleration of biomass burning and carbon losses in Alaskan forests and peatlands.

Nature Geoscience. 4: 27-31.

Gould, P.J.; Harrington, C.A.; St. Clair, B.J.  2011.
Incorporating genetic variation into a model of budburst phenology of coast Douglas-fir (Pseudotsuga menziesii var. menziesii).
Canadian Journal of Forest Research. 41: 139-150.

Haig, S.M.; Bronaugh, W.M.; Crowhurst, R.S. [et al.]. 2011.
Genetic applications in avian conservation.
The Auk. 128(2): 205-229.

 

Magbanua, Z.V.; Ozkan, S.; Bartlett, B.D. [et al.]. 2011.
Adventures in the enormous: a 1.8 million clone BAC library for the 21.7 Gb genome of loblolly pine.

PLoS ONE. 6(1): 1-9.

Njuguna, W.; Liston, A.; Cronn, R.; Bassil, N.V. 2010.
Multiplexed fragaria chloroplast genome sequencing.
In: Basil, N.V.; Martin, R., eds. International Symposium on Molecular Markers in Horticulture. ISHS Acta Horticulturae 859: 315-321.

Graham, C.B.; Woods, R.A.; McDonnell, J.J. 2010.
Hillslope threshold response to rainfall: (1) a field based forensic approach.

Journal of Hydrology. 393: 65-76.

Graham, C.B.; McDonnell, J.J. 2010.
Hillslope threshold response to rainfall: (2) development and use of a macroscale model.

Journal of Hydrology. 393: 77-93.

Jones, J.A.; Perkins, R.M. 2010.
Extreme flood sensitivity to snow and forest harvest, western Cascades, Oregon, United States.
Water Resources Research 46. (doi:10.1029/2009WR008632): W12512.

Kluber, L.A.; Tinnesand, K.M.; Caldwell, B.A. [et al.]. 2010.
Ectomycorrhizal mats alter forest soil biogeochemistry.
Soil Biology and Biochemistry. 42: 1607-1613.

McGuire, K.J.; McDonnell, J.J. 2011.
Hydrological connectivity of hillslopes and streams: characteristic time scales and nonlinearities.
Water Resources Research. 46: W10543. doi:10.1029/2010WR009341.

Wondzell, S.M. 2011.
The role of the hyporheic zone across stream networks.
Hydrological Processes. doi:10.1002/hyp.8119: 8 p.

Pattison, R.R.; D'Antonio, C.M.; Dudley, T.L. [et al.]. 2010.
Early impacts of biological control on canopy cover and water use of the invasive saltcedar tree (Tamarix spp.)in western Nevada, USA.
Oecologia. doi: 10.1007/s00442-010-1859-y. 12 p.

 

Pattison, R.R.; D'Antonio, C.M.; Dudley, T.L. 2011.
Biological control reduces growth, and alters water relations of the saltcedar tree (Tamarix spp.) in western Nevada, USA.
Journal of Arid Environments. 75: 346-352.

Pfeifer, E.M.; Hicke, J.A.; Meddens, A.J.H. 2011.
Observations and modeling of aboveground tree carbon stocks and fluxes following a bark beetle outbreak in the western United States.
Global Change Biology. 17: 339-350.

Medhurst, R.B.; Wipfli, M.S.; Binckley, C. [et al.]. 2010.

Headwater streams and forest management: Does ecoregional context influence logging effects on benthic communities?
Hydrobiologia. 64: 71-83.

Halofsky, J.E.; Donato, D.C.; Hibbs, D.E. [et al.]. 2011.
Mixed-severity fire regimes: lessons and hypotheses from the Klamath-Siskiyou ecoregion.
Ecosphere. 2(4): r40.

 

Ohmann, J.L.; Gregory, M.J.; Henderson, E.B.; Roberts, H.M. 2011.
Mapping gradients of community composition with nearest-neighbour imputation: extending plot data for landscape analysis.
Journal of Vegetation Science. doi: 10.1111/j.1654-1103.2010.01244.x: 17 p.

Ammarellou, A.; Smith, M.E.; Tajick, M.A.; Trappe, J.M. 2011.
The phylogenetic placement of Picoa, with a first report on Picoa lefebvrei (Pat.) Maire (=Phaeangium lefebvrei) from Iran.
International Journal of Environmental Research. 5(2): 509-514.

Bonito, G.M.; Gryganskyi, A.P.; Trappe, J.M.; Vilgalys, R. 2010.
A global meta-analysis of Tuber ITS rDNA sequences: species diversity, host associations and long-distance dispersal.
Molecular Ecology. 19: 4994-5008.

Bonito, G.M.; Trappe, J.M.; Rawlinson, P.; Vilgalys, R. 2010.
Improved resolution of major clades within Tuber and taxonomy of species within the Tuber gibbosum complex.
Mycologia. 102(5): 1042-1057.

Bonito, G.; Trappe, J.M.; Donovan, S.; Vilgalys, R. 2011.
The Asian black truffle Tuber indicum can form ectomycorrhizas with North American host plants and complete its life cycle in non-native soils.
Fungal Ecology. 4: 83-93.

Castellano, M.A.; Trappe, J.M.; Vernes, K. 2011.
Australian species of Elaphomyces (Elaphomycetaceae, Eurotiales, Ascomycota).
Australian Systematic Botany. 24: 32-57.

Trappe, M.J.; Trappe, J.M.; Bonito, G.M. 2010.
Kalapuya brunnea gen. & sp. nov. and its relationship to the other sequestrate genera in Morchellaceae.
Mycologia. 102(5): 1058-1065.

Farley, K.A.; Tague, C.; Grant, G.E. 2011.
Vulnerability of water supply from the Oregon Cascades to changing climate: linking science to users and policy.
Global Environmental Change. 21: 110-122.

Barnard, D.M.; Meinzer, F.C.; Lachenbruch, B.; McCulloh, K.A. [et al.]. 2011.
Climate-related trends in sapwood biophysical properties in two conifers: avoidance of hydraulic dysfunction through coordinated adjustments in xylem efficiency, safety and capacitance.
Plant, Cell & Environment. 34: 643-654.

Chmura, D.J.; Anderson, P.D.; Howe, G.T. [et al.]. 2011.
Forest responses to climate change in the northwestern United States: ecophysiological foundations for adaptive management.
Forest Ecology and Management. 261: 1121-1142.

Lintz, H.E.; McCune, B.; Gray, A.N.; McCulloh, K.A. 2011.
Quantifying ecological thresholds from response surfaces.

Ecological Modelling. 222: 427-436.

Rinella, M.J.; Vavra, M.; Naylor, B.J.; Boyd, J.M. 2011.
Estimating influence of stocking regimes on livestock grazing distributions.
Ecological Modelling. 222: 619-625.

Gordon, S.N.; Kirsten, G. 2011.
Structuring expert input for a knowledge-based approach to watershed condition assessment for the Northwest Forest Plan, USA.
Environmental Monitoring Assessment. 172(1-4): 643-661.

Kumar, A.; Marcot, B.G.; Talukdar, G. 2010.
Designing a protected area network for conservation planning in Jhum landscapes of Garo Hills, Meghalaya.
Journal of the Indian Society of Remote Sensing. 38(3): 501-512.

Heath, L.S.; Smith, J.E.; Woodall, C.W. [et al.]. 2011.
Carbon stocks on forestland of the United States, with emphasis on USDA Forest Service ownership.
Ecosphere. 2(1): 1-21. 38(3): 501-512.

Busby, G.; Albers, H.J. 2010.
Wildfire risk management on a landscape with public and private ownership: Who pays for protection?
Environmental Management. 45: 296-310.

Devine, W.D.; Harrington, C.A. 2011.
Factors affecting diurnal stem contraction in young Douglas-fir.
Agricultural and Forest Meteorology. 151: 414-419.

Harrington, C.A.; Devine, W.D. 2011.
Stand development following precommercial thinning and fertilization treatments in a western redcedar (Thuja plicata) dominated forest.
Canadian Journal of Forestry Research. 41: 151-164.

O'Hara, K.L.; Youngblood, A.; Waring, K.M. 2010.
Maturity selection versus improvement selection: lessons from a mid-20th century controversy in the silviculture of ponderosa pine.
Journal of Forestry. 108(8): 397-407.

Youngblood, A. 2011.
Ecological lessons from long-term studies in experimental forests: ponderosa pine silviculture at Pringle Falls Experimental Forest, central Oregon.
Forest Ecology and Management. 261: 937-947.

Youngblood, A.; Cole, E.; Newton, M. 2011.
Survival and growth response of white spruce stock types to site preparation in Alaska.
Canadian Journal of Forest Research. 41: 793-809.

Fischer, A.P.; Charnley, S. 2010.
Social and cultural influences on management for carbon sequestration on US family forestlands: a literature synthesis.
International Journal of Forestry Research. Article ID 960912: 14 p.

Johnson, J.C.; Christian, R.R.; Brunt, J.W. [et al.]. 2010.
Evolution of collaboration within the US long term ecological research network.
BioScience. 60(11): 931-940.

D'Amore, D.V.; Bonzey, N.S.; Berkowitz, J. [et al.]. 2011.
Holocene soil-geomorphic surfaces influence the role of salmon-derived nutrients in the coastal temperate rainforest of Southeast Alaska.
Geomorphology. 126: 377-386.

Kluber, L.A.; Smith, J.E.; Myrold, D.D. 2011.
Distinctive fungal and bacterial communities are associated with mats formed by ectomycorrhizal fungi.
Soil Biology & Biochemistry. 42: 1042-1050.

Amstrup, S.C.; DeWeaver, E.T.; Douglas, D.C.; Marcot, B.G. [et al.]. 2010.
Greenhouse gas mitigation can reduce sea-ice loss and increase polar bear persistence.
Nature. 468: 955-958.

Brinkman, T.J.; Person, D.K.; Chapin, F.S., III. [et al.]. 2011.
Estimating abundance of Sitka black-tailed deer using DNA from fecal pellets.
Journal of Wildlife Management. 75(1): 232-242.

Coe, P.K.; Johnson, B.K.; Wisdom, M.J. [et al.]. 2011.
Validation of elk resource selection models with spatially independent data.
Journal of Wildlife Management. 75(1): 159-170.

Holloway, G.L.; Smith, W.P. 2011.
A meta-analysis of forest age and structure effects on northern flying squirrel densities.
Journal of Wildlife Management. 75(3): 668-674.

Knaus, B.J.; Cronn, R.; Liston, A. [et al.]. 2011.
Mitochondrial genome sequences illuminate maternal lineages of conservation concern in a rare carnivore.
BMC Biology. 11: 7. 14 p.

Lorenz, T.J.; Sullivan, K.A.; Bakian, A.V.; Aubry, C.A. 2011.
Cache-site selection in Clark's Nutcracker (Nucifraga columbiana).
The Auk. 128(2): 237-247.

Paoletti, D.J.; Olson, D.H.; Blaustein, A.R. 2011.
Responses of foothill yellow-legged frog (Rana boylii) larvae to an introduced predator.
Copeia. 2011(1): 161-168.

Shoo, L.P.; Olson, D.H.; McMenamin, S.K. [et al.]. 2011.
Engineering a future for amphibians under climate change.
Journal of Applied Ecology. 48: 487-492.

Smith, W.P.; Coblentz, B.E. 2010.
Cattle or sheep reduce fawning habitat available to Columbian white-tailed deer in western Oregon.
Northwest Science. 84(4): 315-326.

Spalinger, D.E.; Collins, W.B.; Hanley, Thomas A. [et al.]. 2010.
The impact of tannins on protein, dry matter, and energy digestion in moose (Alces alces).
Canadian Journal of Zoology. 88: 977-987.

Voelker, S.L.; Lachenbruch, B.; Meinzer, F.C. [et al.]. 2011.
Transgenic poplars with reduced lignin show impaired xylem conductivity, growth efficiency and survival.
Plant, Cell and Environment. 34: 655-668.

Voelker, S.L.; Lachenbruch, B.; Meinzer, F.C. [et al.]. 2011.
Reduced wood stiffness and strength, and altered stem form, in young antisense 4CL transgenic poplars with reduced lignin contents.
New Phytologist. 189: 1096-1109.